Analysis of interatomic Contacts of Structural Units in PDB entry:
2RLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RLC entry

There is 1 chain in PDB entry 2RLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ASN 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2RLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 113Right-handed alpha
Helix 2
2
A
115 124Right-handed alpha
Helix 3
3
A
178 187Right-handed alpha
Helix 4
4
A
188 190Right-handed 310
Helix 5
5
A
213 217Right-handed 310
Helix 6
6
A
224 244Right-handed alpha
Helix 7
7
A
245 247Right-handed 310
Helix 8
8
A
248 258Right-handed alpha
Helix 9
9
A
305 307Right-handed 310
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There are 5 sheets in PDB entry 2RLC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
14 22anti-parallel
Strand 4
A
275 283anti-parallel
Strand 5
A
288 293anti-parallel
Strand 6
A
300 303anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
64 72anti-parallel
Strand 6
A
54 61anti-parallel
Strand 7
A
29 33anti-parallel
Strand 8
A
315 318anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
47 49anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
126 129parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
205 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il