Analysis of interatomic Contacts of Structural Units in PDB entry:
2SCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2SCP entry

There are 2 chains in PDB entry 2SCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1VAL 174
B
 SER 1VAL 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2SCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
1 15Right-handed alpha
Helix 2
B
A
25 38Right-handed alpha
Helix 3
C
A
43 62Right-handed alpha
Helix 4
D
A
72 84Right-handed alpha
Helix 5
E
A
89 103Right-handed alpha
Helix 6
F
A
113 122Right-handed alpha
Helix 7
G
A
127 137Right-handed alpha
Helix 8
H
A
147 159Right-handed alpha
Helix 9
I
B
1 15Right-handed alpha
Helix 10
J
B
25 38Right-handed alpha
Helix 11
K
B
43 62Right-handed alpha
Helix 12
L
B
72 84Right-handed alpha
Helix 13
M
B
89 103Right-handed alpha
Helix 14
N
B
113 122Right-handed alpha
Helix 15
O
B
127 137Right-handed alpha
Helix 16
P
B
147 159Right-handed alpha
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There are 4 sheets in PDB entry 2SCP. Click on sheet of interest to get list of strands forming it: AA, BA, AB, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
69 71anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
144 146anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
69 71anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
144 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il