Analysis of interatomic Contacts of Structural Units in PDB entry:
2SHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2SHP entry

There are 2 chains in PDB entry 2SHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 525
B
 LYS 2LEU 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2SHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
74 83Right-handed alpha
Helix 3
3
A
119 129Right-handed alpha
Helix 4
4
A
190 199Right-handed alpha
Helix 5
5
A
223 234Right-handed 310
Helix 6
6
A
247 261Right-handed alpha
Helix 7
7
A
266 269Right-handed alpha
Helix 8
8
A
271 276Right-handed 310
Helix 9
9
A
335 347Right-handed 310
Helix 10
10
A
432 447Right-handed alpha
Helix 11
11
A
465 482Right-handed alpha
Helix 12
12
A
490 498Right-handed alpha
Helix 13
13
A
508 523Right-handed alpha
Helix 14
14
B
13 23Right-handed alpha
Helix 15
15
B
74 83Right-handed alpha
Helix 16
16
B
119 129Right-handed alpha
Helix 17
17
B
190 199Right-handed alpha
Helix 18
18
B
223 234Right-handed 310
Helix 19
19
B
247 261Right-handed alpha
Helix 20
20
B
266 269Right-handed alpha
Helix 21
21
B
271 276Right-handed 310
Helix 22
22
B
338 348Right-handed alpha
Helix 23
23
B
432 447Right-handed alpha
Helix 24
24
B
465 482Right-handed alpha
Helix 25
25
B
490 498Right-handed alpha
Helix 26
26
B
508 523Right-handed alpha
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There are 8 sheets in PDB entry 2SHP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
40 47anti-parallel
Strand 3
A
50 57anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
166 172anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
178 180anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 311first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
455 458parallel
Strand 4
A
352 355parallel
Strand 5
A
413 420parallel
Strand 6
A
396 405anti-parallel
Strand 7
A
383 392anti-parallel
Strand 8
A
377 380anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
40 47anti-parallel
Strand 3
B
50 57anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
147 153anti-parallel
Strand 3
B
166 172anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
178 180anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 310first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
455 458parallel
Strand 4
B
352 355parallel
Strand 5
B
413 420parallel
Strand 6
B
396 405anti-parallel
Strand 7
B
383 392anti-parallel
Strand 8
B
377 380anti-parallel
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