Analysis of interatomic Contacts of Structural Units in PDB entry:
2TMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2TMK entry

There are 2 chains in PDB entry 2TMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3PHE 216
B
 GLY 3PHE 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2TMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
62 74Right-handed alpha
Helix 4
4
A
77 85Right-handed alpha
Helix 5
5
A
96 106Right-handed alpha
Helix 6
6
A
113 120Right-handed alpha
Helix 7
7
A
154 174Right-handed alpha
Helix 8
8
A
189 205Right-handed alpha
Helix 9
9
B
18 29Right-handed alpha
Helix 10
10
B
44 54Right-handed alpha
Helix 11
11
B
62 74Right-handed alpha
Helix 12
12
B
77 85Right-handed alpha
Helix 13
13
B
96 106Right-handed alpha
Helix 14
14
B
113 120Right-handed alpha
Helix 15
15
B
154 173Right-handed alpha
Helix 16
16
B
189 205Right-handed alpha
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There are 2 sheets in PDB entry 2TMK. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
128 133parallel
Strand 3
A
7 12parallel
Strand 4
A
89 93parallel
Strand 5
A
33 37parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
128 133parallel
Strand 3
B
7 12parallel
Strand 4
B
89 93parallel
Strand 5
B
33 37parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il