Analysis of interatomic Contacts of Structural Units in PDB entry:
2UUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UUD entry

There are 6 chains in PDB entry 2UUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1ALA 113
J
 GLU 1ALA 113
K
 GLN 1ARG 107
L
 GLN 1ARG 107
S
 SER 1ALA 18
T
 SER 1ALA 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2UUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
28 32Right-handed 310
Helix 2
2
H
52 54Right-handed 310
Helix 3
3
H
61 64Right-handed 310
Helix 4
4
H
83 87Right-handed 310
Helix 5
5
J
28 32Right-handed 310
Helix 6
6
J
52 54Right-handed 310
Helix 7
7
J
83 87Right-handed 310
Helix 8
8
L
79 83Right-handed 310
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There are 11 sheets in PDB entry 2UUD. Click on sheet of interest to get list of strands forming it: HA, HB, HC, JA, JB, JC, KA, KB, KC, LA, LB,

There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
68 72anti-parallel
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There are 6 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 7first strand
Strand 2
J
19 25anti-parallel
Strand 3
J
77 82anti-parallel
Strand 4
J
67 71anti-parallel
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There are 5 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 94anti-parallel
Strand 4
J
34 39anti-parallel
Strand 5
J
46 51anti-parallel
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There are 4 strands in JC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 94anti-parallel
Strand 4
J
102 103anti-parallel
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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
5 6first strand
Strand 2
K
20 24anti-parallel
Strand 3
K
70 74anti-parallel
Strand 4
K
64 67anti-parallel
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There are 5 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 12first strand
Strand 2
K
102 105parallel
Strand 3
K
84 90anti-parallel
Strand 4
K
33 38anti-parallel
Strand 5
K
45 46anti-parallel
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There are 4 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 12first strand
Strand 2
K
102 105parallel
Strand 3
K
84 90anti-parallel
Strand 4
K
97 98anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 65anti-parallel
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There are 7 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 46first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
Strand 5
L
85 90anti-parallel
Strand 6
L
102 103anti-parallel
Strand 7
L
85 90anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il