Analysis of interatomic Contacts of Structural Units in PDB entry:
2UUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2UUU entry

There are 4 chains in PDB entry 2UUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET -3	LEU 586
B	HIS 12	LEU 586
C	HIS 12	LYS 585
D	GLY -5	LYS 585

There are 94 helices in PDB entry 2UUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	19	Right-handed alpha
Helix 2	2	A	54	63	Right-handed alpha
Helix 3	3	A	82	86	Right-handed 310
Helix 4	4	A	94	103	Right-handed alpha
Helix 5	5	A	106	108	Right-handed 310
Helix 6	6	A	113	120	Right-handed alpha
Helix 7	7	A	125	134	Right-handed alpha
Helix 8	8	A	149	164	Right-handed alpha
Helix 9	9	A	217	228	Right-handed alpha
Helix 10	10	A	238	242	Right-handed 310
Helix 11	11	A	243	251	Right-handed alpha
Helix 12	12	A	256	261	Right-handed alpha
Helix 13	13	A	262	266	Right-handed alpha
Helix 14	14	A	293	298	Right-handed alpha
Helix 15	15	A	330	345	Right-handed alpha
Helix 16	16	A	355	365	Right-handed alpha
Helix 17	17	A	375	387	Right-handed alpha
Helix 18	18	A	405	422	Right-handed alpha
Helix 19	19	A	434	439	Right-handed alpha
Helix 20	20	A	442	452	Right-handed alpha
Helix 21	21	A	466	486	Right-handed alpha
Helix 22	22	A	521	538	Right-handed alpha
Helix 23	23	A	563	576	Right-handed alpha
Helix 24	24	B	14	19	Right-handed alpha
Helix 25	25	B	52	63	Right-handed alpha
Helix 26	26	B	82	86	Right-handed 310
Helix 27	27	B	94	103	Right-handed alpha
Helix 28	28	B	106	108	Right-handed 310
Helix 29	29	B	113	120	Right-handed alpha
Helix 30	30	B	125	134	Right-handed alpha
Helix 31	31	B	149	164	Right-handed alpha
Helix 32	32	B	195	197	Right-handed 310
Helix 33	33	B	217	228	Right-handed alpha
Helix 34	34	B	238	242	Right-handed 310
Helix 35	35	B	243	251	Right-handed alpha
Helix 36	36	B	256	261	Right-handed alpha
Helix 37	37	B	262	266	Right-handed alpha
Helix 38	38	B	293	298	Right-handed alpha
Helix 39	39	B	330	345	Right-handed alpha
Helix 40	40	B	355	364	Right-handed alpha
Helix 41	41	B	373	390	Right-handed alpha
Helix 42	42	B	405	422	Right-handed alpha
Helix 43	43	B	438	441	Right-handed 310
Helix 44	44	B	442	453	Right-handed alpha
Helix 45	45	B	466	486	Right-handed alpha
Helix 46	46	B	521	538	Right-handed alpha
Helix 47	47	B	563	576	Right-handed alpha
Helix 48	48	C	14	18	Right-handed 310
Helix 49	49	C	54	63	Right-handed alpha
Helix 50	50	C	82	86	Right-handed 310
Helix 51	51	C	94	105	Right-handed alpha
Helix 52	52	C	106	108	Right-handed 310
Helix 53	53	C	113	120	Right-handed alpha
Helix 54	54	C	125	134	Right-handed alpha
Helix 55	55	C	149	164	Right-handed alpha
Helix 56	56	C	195	197	Right-handed 310
Helix 57	57	C	217	228	Right-handed alpha
Helix 58	58	C	238	242	Right-handed 310
Helix 59	59	C	243	251	Right-handed alpha
Helix 60	60	C	256	261	Right-handed alpha
Helix 61	61	C	262	266	Right-handed alpha
Helix 62	62	C	293	298	Right-handed alpha
Helix 63	63	C	330	345	Right-handed alpha
Helix 64	64	C	355	365	Right-handed alpha
Helix 65	65	C	374	387	Right-handed alpha
Helix 66	66	C	405	422	Right-handed alpha
Helix 67	67	C	434	441	Right-handed 310
Helix 68	68	C	442	453	Right-handed alpha
Helix 69	69	C	466	486	Right-handed alpha
Helix 70	70	C	524	538	Right-handed alpha
Helix 71	71	C	563	576	Right-handed alpha
Helix 72	72	D	14	18	Right-handed 310
Helix 73	73	D	52	62	Right-handed alpha
Helix 74	74	D	82	86	Right-handed 310
Helix 75	75	D	94	102	Right-handed alpha
Helix 76	76	D	106	108	Right-handed 310
Helix 77	77	D	113	120	Right-handed alpha
Helix 78	78	D	125	135	Right-handed alpha
Helix 79	79	D	149	164	Right-handed alpha
Helix 80	80	D	217	227	Right-handed alpha
Helix 81	81	D	238	242	Right-handed 310
Helix 82	82	D	243	251	Right-handed alpha
Helix 83	83	D	256	261	Right-handed alpha
Helix 84	84	D	262	266	Right-handed alpha
Helix 85	85	D	293	298	Right-handed alpha
Helix 86	86	D	330	345	Right-handed alpha
Helix 87	87	D	355	365	Right-handed alpha
Helix 88	88	D	373	387	Right-handed alpha
Helix 89	89	D	405	422	Right-handed alpha
Helix 90	90	D	435	441	Right-handed 310
Helix 91	91	D	442	453	Right-handed alpha
Helix 92	92	D	466	486	Right-handed alpha
Helix 93	93	D	522	537	Right-handed alpha
Helix 94	94	D	563	576	Right-handed alpha

There are 20 sheets in PDB entry 2UUU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	40	43	anti-parallel
Strand 3	A	50	51	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	143	145	anti-parallel
Strand 3	A	189	193	parallel
Strand 4	A	166	170	parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	209	213	anti-parallel
Strand 3	A	306	313	anti-parallel
Strand 4	A	267	274	anti-parallel
Strand 5	A	277	279	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	315	316	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	431	first strand
Strand 2	A	320	328	anti-parallel
Strand 3	A	396	404	anti-parallel
Strand 4	A	350	354	anti-parallel
Strand 5	A	491	501	anti-parallel
Strand 6	A	504	514	anti-parallel
Strand 7	A	455	465	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	40	43	anti-parallel
Strand 3	B	50	51	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	143	145	anti-parallel
Strand 3	B	189	193	parallel
Strand 4	B	166	170	parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	209	213	anti-parallel
Strand 3	B	306	313	anti-parallel
Strand 4	B	267	274	anti-parallel
Strand 5	B	277	279	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	315	316	anti-parallel

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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	430	first strand
Strand 2	B	320	328	anti-parallel
Strand 3	B	396	404	anti-parallel
Strand 4	B	350	354	anti-parallel
Strand 5	B	491	501	anti-parallel
Strand 6	B	504	514	anti-parallel
Strand 7	B	455	465	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	40	43	anti-parallel
Strand 3	C	50	51	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	143	145	anti-parallel
Strand 3	C	189	193	parallel
Strand 4	C	166	170	parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	204	first strand
Strand 2	C	209	213	anti-parallel
Strand 3	C	306	313	anti-parallel
Strand 4	C	267	274	anti-parallel
Strand 5	C	277	279	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	315	316	anti-parallel

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There are 7 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	430	first strand
Strand 2	C	320	328	anti-parallel
Strand 3	C	396	404	anti-parallel
Strand 4	C	350	354	anti-parallel
Strand 5	C	491	501	anti-parallel
Strand 6	C	504	514	anti-parallel
Strand 7	C	455	465	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	40	43	anti-parallel
Strand 3	D	50	51	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	143	145	anti-parallel
Strand 3	D	189	193	parallel
Strand 4	D	166	170	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	209	213	anti-parallel
Strand 3	D	306	313	anti-parallel
Strand 4	D	267	274	anti-parallel
Strand 5	D	277	279	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	231	first strand
Strand 2	D	315	316	anti-parallel

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There are 7 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	430	first strand
Strand 2	D	320	328	anti-parallel
Strand 3	D	396	404	anti-parallel
Strand 4	D	350	354	anti-parallel
Strand 5	D	491	501	anti-parallel
Strand 6	D	504	514	anti-parallel
Strand 7	D	455	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2UUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
2UUU