Analysis of interatomic Contacts of Structural Units in PDB entry:
2UVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UVF entry

There are 2 chains in PDB entry 2UVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 36VAL 606
B
 ASP 36ALA 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 2UVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 89Right-handed alpha
Helix 2
2
A
91 101Right-handed alpha
Helix 3
3
A
102 106Right-handed 310
Helix 4
4
A
160 163Right-handed 310
Helix 5
5
A
172 182Right-handed alpha
Helix 6
6
A
222 226Right-handed 310
Helix 7
7
A
300 305Right-handed alpha
Helix 8
8
A
306 318Right-handed alpha
Helix 9
9
A
321 329Right-handed alpha
Helix 10
10
A
412 418Right-handed 310
Helix 11
11
A
545 548Right-handed 310
Helix 12
12
B
81 89Right-handed alpha
Helix 13
13
B
91 99Right-handed alpha
Helix 14
14
B
160 163Right-handed 310
Helix 15
15
B
172 183Right-handed alpha
Helix 16
16
B
222 226Right-handed 310
Helix 17
17
B
300 305Right-handed alpha
Helix 18
18
B
306 318Right-handed alpha
Helix 19
19
B
321 329Right-handed alpha
Helix 20
20
B
412 418Right-handed 310
Helix 21
21
B
545 548Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 2UVF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
114 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
125 134anti-parallel
Strand 4
A
146 149anti-parallel
Back to list of sheets
Back to top of page

There are 18 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
187 191parallel
Strand 3
A
207 211parallel
Strand 4
A
258 264parallel
Strand 5
A
339 345parallel
Strand 6
A
363 368parallel
Strand 7
A
389 394parallel
Strand 8
A
421 427parallel
Strand 9
A
448 454parallel
Strand 10
A
476 490parallel
Strand 11
A
457 459parallel
Strand 12
A
430 431parallel
Strand 13
A
397 399parallel
Strand 14
A
371 373parallel
Strand 15
A
348 350parallel
Strand 16
A
268 270parallel
Strand 17
A
215 219parallel
Strand 18
A
194 198parallel
Back to list of sheets
Back to top of page

There are 12 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
187 191parallel
Strand 3
A
207 211parallel
Strand 4
A
258 264parallel
Strand 5
A
339 345parallel
Strand 6
A
363 368parallel
Strand 7
A
389 394parallel
Strand 8
A
421 427parallel
Strand 9
A
448 454parallel
Strand 10
A
476 490parallel
Strand 11
A
518 532parallel
Strand 12
A
551 562parallel
Back to list of sheets
Back to top of page

There are 12 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
245 247parallel
Strand 3
A
334 337parallel
Strand 4
A
357 360parallel
Strand 5
A
383 386parallel
Strand 6
A
405 408parallel
Strand 7
A
438 441parallel
Strand 8
A
463 470parallel
Strand 9
A
493 500parallel
Strand 10
A
539 542parallel
Strand 11
A
568 570parallel
Strand 12
A
593 594parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 283first strand
Strand 2
A
289 293anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
114 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
66 73anti-parallel
Strand 3
B
125 134anti-parallel
Strand 4
B
146 149anti-parallel
Back to list of sheets
Back to top of page

There are 20 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
207 211parallel
Strand 4
B
258 264parallel
Strand 5
B
339 345parallel
Strand 6
B
363 368parallel
Strand 7
B
389 394parallel
Strand 8
B
421 427parallel
Strand 9
B
448 454parallel
Strand 10
B
476 483parallel
Strand 11
B
518 532parallel
Strand 12
B
486 490parallel
Strand 13
B
457 459parallel
Strand 14
B
430 431parallel
Strand 15
B
397 399parallel
Strand 16
B
371 373parallel
Strand 17
B
348 350parallel
Strand 18
B
268 270parallel
Strand 19
B
215 219parallel
Strand 20
B
194 198parallel
Back to list of sheets
Back to top of page

There are 13 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
207 211parallel
Strand 4
B
258 264parallel
Strand 5
B
339 345parallel
Strand 6
B
363 368parallel
Strand 7
B
389 394parallel
Strand 8
B
421 427parallel
Strand 9
B
448 454parallel
Strand 10
B
476 483parallel
Strand 11
B
518 532parallel
Strand 12
B
551 562parallel
Strand 13
B
568 583parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 283first strand
Strand 2
B
289 293anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il