Analysis of interatomic Contacts of Structural Units in PDB entry:
2UX8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2UX8 entry

There are 8 chains in PDB entry 2UX8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLY 289
B	THR 2	GLY 289
C	MET 1	GLY 289
D	THR 2	GLY 289
E	THR 2	GLY 289
F	THR 2	GLY 289
G	THR 2	GLY 289
H	THR 2	GLY 289

There are112 helices in PDB entry 2UX8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	21	Right-handed 310
Helix 2	2	A	28	31	Right-handed 310
Helix 3	3	A	39	50	Right-handed alpha
Helix 4	4	A	63	70	Right-handed alpha
Helix 5	5	A	73	82	Right-handed alpha
Helix 6	6	A	86	91	Right-handed 310
Helix 7	7	A	110	117	Right-handed alpha
Helix 8	8	A	118	123	Right-handed alpha
Helix 9	9	A	141	154	Right-handed alpha
Helix 10	10	A	212	221	Right-handed alpha
Helix 11	11	A	234	239	Right-handed 310
Helix 12	12	A	258	273	Right-handed alpha
Helix 13	13	A	276	289	Right-handed alpha
Helix 14	14	B	17	21	Right-handed 310
Helix 15	15	B	28	32	Right-handed 310
Helix 16	16	B	38	50	Right-handed alpha
Helix 17	17	B	63	70	Right-handed alpha
Helix 18	18	B	73	82	Right-handed alpha
Helix 19	19	B	86	91	Right-handed 310
Helix 20	20	B	110	117	Right-handed alpha
Helix 21	21	B	118	123	Right-handed alpha
Helix 22	22	B	141	154	Right-handed alpha
Helix 23	23	B	164	170	Right-handed 310
Helix 24	24	B	212	222	Right-handed alpha
Helix 25	25	B	258	272	Right-handed alpha
Helix 26	26	B	276	289	Right-handed alpha
Helix 27	27	C	17	21	Right-handed 310
Helix 28	28	C	28	32	Right-handed 310
Helix 29	29	C	38	50	Right-handed alpha
Helix 30	30	C	63	70	Right-handed alpha
Helix 31	31	C	73	82	Right-handed alpha
Helix 32	32	C	86	91	Right-handed 310
Helix 33	33	C	110	118	Right-handed alpha
Helix 34	34	C	118	123	Right-handed alpha
Helix 35	35	C	141	154	Right-handed alpha
Helix 36	36	C	164	171	Right-handed 310
Helix 37	37	C	212	221	Right-handed alpha
Helix 38	38	C	231	237	Right-handed alpha
Helix 39	39	C	258	272	Right-handed alpha
Helix 40	40	C	276	288	Right-handed alpha
Helix 41	41	D	17	21	Right-handed 310
Helix 42	42	D	28	31	Right-handed 310
Helix 43	43	D	39	50	Right-handed alpha
Helix 44	44	D	63	70	Right-handed alpha
Helix 45	45	D	73	82	Right-handed alpha
Helix 46	46	D	87	91	Right-handed 310
Helix 47	47	D	110	117	Right-handed alpha
Helix 48	48	D	118	123	Right-handed alpha
Helix 49	49	D	141	154	Right-handed alpha
Helix 50	50	D	164	171	Right-handed 310
Helix 51	51	D	211	221	Right-handed alpha
Helix 52	52	D	231	237	Right-handed alpha
Helix 53	53	D	258	272	Right-handed alpha
Helix 54	54	D	276	287	Right-handed alpha
Helix 55	55	E	17	21	Right-handed 310
Helix 56	56	E	28	31	Right-handed 310
Helix 57	57	E	39	50	Right-handed alpha
Helix 58	58	E	63	70	Right-handed alpha
Helix 59	59	E	73	82	Right-handed alpha
Helix 60	60	E	86	91	Right-handed 310
Helix 61	61	E	110	117	Right-handed alpha
Helix 62	62	E	118	123	Right-handed alpha
Helix 63	63	E	141	154	Right-handed alpha
Helix 64	64	E	164	170	Right-handed 310
Helix 65	65	E	212	221	Right-handed alpha
Helix 66	66	E	231	236	Right-handed alpha
Helix 67	67	E	237	239	Right-handed 310
Helix 68	68	E	258	272	Right-handed alpha
Helix 69	69	E	276	288	Right-handed alpha
Helix 70	70	F	17	21	Right-handed 310
Helix 71	71	F	28	31	Right-handed 310
Helix 72	72	F	39	50	Right-handed alpha
Helix 73	73	F	63	70	Right-handed alpha
Helix 74	74	F	73	82	Right-handed alpha
Helix 75	75	F	86	91	Right-handed 310
Helix 76	76	F	110	117	Right-handed alpha
Helix 77	77	F	118	123	Right-handed alpha
Helix 78	78	F	141	154	Right-handed alpha
Helix 79	79	F	164	171	Right-handed 310
Helix 80	80	F	211	222	Right-handed alpha
Helix 81	81	F	231	237	Right-handed alpha
Helix 82	82	F	258	272	Right-handed alpha
Helix 83	83	F	276	288	Right-handed alpha
Helix 84	84	G	17	21	Right-handed 310
Helix 85	85	G	28	31	Right-handed 310
Helix 86	86	G	39	50	Right-handed alpha
Helix 87	87	G	63	70	Right-handed alpha
Helix 88	88	G	73	82	Right-handed alpha
Helix 89	89	G	86	91	Right-handed 310
Helix 90	90	G	110	117	Right-handed alpha
Helix 91	91	G	118	123	Right-handed alpha
Helix 92	92	G	141	154	Right-handed alpha
Helix 93	93	G	164	171	Right-handed 310
Helix 94	94	G	212	220	Right-handed alpha
Helix 95	95	G	231	236	Right-handed alpha
Helix 96	96	G	237	239	Right-handed 310
Helix 97	97	G	258	272	Right-handed alpha
Helix 98	98	G	276	289	Right-handed alpha
Helix 99	99	H	17	21	Right-handed 310
Helix 100	100	H	28	31	Right-handed 310
Helix 101	101	H	39	50	Right-handed alpha
Helix 102	102	H	63	70	Right-handed alpha
Helix 103	103	H	73	82	Right-handed alpha
Helix 104	104	H	86	91	Right-handed 310
Helix 105	105	H	110	117	Right-handed alpha
Helix 106	106	H	118	123	Right-handed alpha
Helix 107	107	H	141	154	Right-handed alpha
Helix 108	108	H	211	220	Right-handed alpha
Helix 109	109	H	231	236	Right-handed alpha
Helix 110	110	H	237	239	Right-handed 310
Helix 111	111	H	258	272	Right-handed alpha
Helix 112	112	H	276	288	Right-handed alpha

There are 19 sheets in PDB entry 2UX8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, A, DB, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB,

There are 19 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	54	59	parallel
Strand 3	A	100	104	parallel
Strand 4	D	100	104	anti-parallel
Strand 5	D	55	59	parallel
Strand 6	D	9	13	parallel
Strand 7	D	127	130	parallel
Strand 8	D	202	210	anti-parallel
Strand 9	D	173	180	anti-parallel
Strand 10	D	183	190	anti-parallel
Strand 11	D	244	248	anti-parallel
Strand 12	D	156	162	parallel
Strand 13	D	202	210	parallel
Strand 14	D	127	130	anti-parallel
Strand 15	D	9	13	parallel
Strand 16	D	55	59	parallel
Strand 17	D	100	104	parallel
Strand 18	A	100	104	anti-parallel
Strand 19	A	8	13	first strand

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	37	38	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	252	255	anti-parallel

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There are 40 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	100	104	anti-parallel
Strand 4	C	100	104	parallel
Strand 5	C	54	59	anti-parallel
Strand 6	C	8	13	anti-parallel
Strand 7	B	54	59	first strand
Strand 8	B	8	13	anti-parallel
Strand 9	B	100	104	first strand
Strand 10	B	54	59	anti-parallel
Strand 11	B	127	130	first strand
Strand 12	B	8	13	anti-parallel
Strand 13	B	156	162	first strand
Strand 14	B	244	248	anti-parallel
Strand 15	B	172	180	first strand
Strand 16	B	183	191	anti-parallel
Strand 17	B	183	191	first strand
Strand 18	B	172	180	anti-parallel
Strand 19	B	202	210	anti-parallel
Strand 20	B	127	130	anti-parallel
Strand 21	B	244	248	first strand
Strand 22	B	156	162	anti-parallel
Strand 23	C	8	13	first strand
Strand 24	C	54	59	parallel
Strand 25	C	54	59	first strand
Strand 26	C	8	13	anti-parallel
Strand 27	C	100	104	first strand
Strand 28	B	100	104	parallel
Strand 29	C	127	130	first strand
Strand 30	C	8	13	anti-parallel
Strand 31	C	156	162	first strand
Strand 32	C	244	248	parallel
Strand 33	C	173	180	first strand
Strand 34	C	183	190	anti-parallel
Strand 35	C	183	190	first strand
Strand 36	C	173	180	anti-parallel
Strand 37	C	202	210	anti-parallel
Strand 38	C	127	130	parallel
Strand 39	C	244	248	first strand
Strand 40	C	156	162	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	252	255	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	37	38	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	251	255	anti-parallel

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There are 18 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	54	59	parallel
Strand 3	E	54	59	first strand
Strand 4	E	8	13	parallel
Strand 5	E	100	104	first strand
Strand 6	E	54	59	parallel
Strand 7	E	127	130	first strand
Strand 8	E	8	13	parallel
Strand 9	E	156	162	first strand
Strand 10	E	244	248	parallel
Strand 11	E	172	180	first strand
Strand 12	E	183	191	anti-parallel
Strand 13	E	183	191	first strand
Strand 14	E	172	180	anti-parallel
Strand 15	E	202	210	anti-parallel
Strand 16	E	127	130	anti-parallel
Strand 17	E	244	248	first strand
Strand 18	E	156	162	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	37	38	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	252	255	anti-parallel

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There are 18 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	13	first strand
Strand 2	F	54	59	parallel
Strand 3	F	54	59	first strand
Strand 4	F	8	13	parallel
Strand 5	F	100	104	first strand
Strand 6	F	54	59	parallel
Strand 7	F	127	130	first strand
Strand 8	F	8	13	parallel
Strand 9	F	156	162	first strand
Strand 10	F	244	248	parallel
Strand 11	F	173	180	first strand
Strand 12	F	183	190	anti-parallel
Strand 13	F	183	190	first strand
Strand 14	F	173	180	anti-parallel
Strand 15	F	202	210	anti-parallel
Strand 16	F	127	130	anti-parallel
Strand 17	F	244	248	first strand
Strand 18	F	156	162	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	37	38	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	137	first strand
Strand 2	F	252	255	anti-parallel

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There are 34 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	13	first strand
Strand 2	G	54	59	parallel
Strand 3	G	54	59	first strand
Strand 4	G	8	13	parallel
Strand 5	G	100	104	first strand
Strand 6	G	54	59	parallel
Strand 7	G	127	130	first strand
Strand 8	G	8	13	parallel
Strand 9	G	156	162	first strand
Strand 10	G	244	248	parallel
Strand 11	G	173	180	first strand
Strand 12	G	183	190	anti-parallel
Strand 13	G	183	190	first strand
Strand 14	G	173	180	anti-parallel
Strand 15	G	202	210	anti-parallel
Strand 16	G	127	130	anti-parallel
Strand 17	G	244	248	first strand
Strand 18	G	156	162	parallel
Strand 19	H	8	13	first strand
Strand 20	H	127	130	parallel
Strand 21	H	55	59	first strand
Strand 22	H	8	13	parallel
Strand 23	H	100	104	first strand
Strand 24	G	100	104	anti-parallel
Strand 25	H	127	130	first strand
Strand 26	H	8	13	parallel
Strand 27	H	156	160	first strand
Strand 28	H	244	248	parallel
Strand 29	H	184	185	anti-parallel
Strand 30	H	244	248	anti-parallel
Strand 31	H	205	210	first strand
Strand 32	H	127	130	anti-parallel
Strand 33	H	244	248	first strand
Strand 34	H	156	160	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	37	38	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	138	first strand
Strand 2	G	251	255	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	37	38	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	137	first strand
Strand 2	H	252	255	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2UX8

Analysis of interatomic Contacts of Structural Units in PDB entry:
2UX8