Analysis of interatomic Contacts of Structural Units in PDB entry:
2UXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UXR entry

There are 2 chains in PDB entry 2UXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 402
B
 MET 1ARG 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 2UXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
44 51Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
78 86Right-handed alpha
Helix 5
5
A
93 103Right-handed alpha
Helix 6
6
A
135 140Right-handed 310
Helix 7
7
A
183 201Right-handed alpha
Helix 8
8
A
216 232Right-handed alpha
Helix 9
9
A
232 240Right-handed alpha
Helix 10
10
A
248 258Right-handed alpha
Helix 11
11
A
267 283Right-handed alpha
Helix 12
12
A
308 317Right-handed alpha
Helix 13
13
A
325 344Right-handed alpha
Helix 14
14
A
345 365Right-handed alpha
Helix 15
15
A
369 374Right-handed alpha
Helix 16
16
A
385 399Right-handed alpha
Helix 17
17
B
15 20Right-handed alpha
Helix 18
18
B
21 30Right-handed alpha
Helix 19
19
B
31 33Right-handed 310
Helix 20
20
B
44 49Right-handed alpha
Helix 21
21
B
53 67Right-handed alpha
Helix 22
22
B
78 85Right-handed alpha
Helix 23
23
B
93 103Right-handed alpha
Helix 24
24
B
135 140Right-handed 310
Helix 25
25
B
183 200Right-handed alpha
Helix 26
26
B
216 232Right-handed alpha
Helix 27
27
B
232 238Right-handed alpha
Helix 28
28
B
248 256Right-handed alpha
Helix 29
29
B
267 283Right-handed alpha
Helix 30
30
B
325 343Right-handed alpha
Helix 31
31
B
348 365Right-handed alpha
Helix 32
32
B
369 374Right-handed alpha
Helix 33
33
B
385 392Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2UXR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
9 13parallel
Strand 3
A
68 71parallel
Strand 4
A
299 302parallel
Strand 5
A
288 293anti-parallel
Strand 6
A
105 110anti-parallel
Strand 7
A
128 132anti-parallel
Strand 8
A
262 266parallel
Strand 9
A
203 208parallel
Strand 10
A
243 247parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
174 182anti-parallel
Strand 3
B
174 182anti-parallel
Strand 4
B
141 145anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 170first strand
Strand 2
A
149 156anti-parallel
Strand 3
B
149 156anti-parallel
Strand 4
B
162 170anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 368first strand
Strand 2
A
382 383parallel
Back to list of sheets
Back to top of page

There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
9 13parallel
Strand 3
B
68 71parallel
Strand 4
B
299 302parallel
Strand 5
B
288 293anti-parallel
Strand 6
B
105 110anti-parallel
Strand 7
B
128 132anti-parallel
Strand 8
B
262 266parallel
Strand 9
B
203 208parallel
Strand 10
B
243 247parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 368first strand
Strand 2
B
382 383parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il