Analysis of interatomic Contacts of Structural Units in PDB entry:
2UXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UXS entry

There are 3 chains in PDB entry 2UXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7ALA 166
B
 GLY 7ALA 166
C
 GLY 7ALA 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2UXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 110Right-handed 310
Helix 2
2
A
114 118Right-handed 310
Helix 3
3
A
119 133Right-handed alpha
Helix 4
4
A
150 165Right-handed alpha
Helix 5
5
B
106 110Right-handed 310
Helix 6
6
B
114 118Right-handed 310
Helix 7
7
B
119 133Right-handed alpha
Helix 8
8
B
150 165Right-handed alpha
Helix 9
9
C
106 110Right-handed 310
Helix 10
10
C
114 118Right-handed 310
Helix 11
11
C
119 133Right-handed alpha
Helix 12
12
C
150 165Right-handed alpha
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There are 6 sheets in PDB entry 2UXS. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 13 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
78 91anti-parallel
Strand 3
A
146 149anti-parallel
Strand 4
A
48 52first strand
Strand 5
A
10 16anti-parallel
Strand 6
A
64 67first strand
Strand 7
A
48 52anti-parallel
Strand 8
A
78 91first strand
Strand 9
A
10 16anti-parallel
Strand 10
A
94 103first strand
Strand 11
A
64 67parallel
Strand 12
A
146 149first strand
Strand 13
A
78 91anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
33 38anti-parallel
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There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 16first strand
Strand 2
B
78 91anti-parallel
Strand 3
B
48 52first strand
Strand 4
B
10 16anti-parallel
Strand 5
B
64 67first strand
Strand 6
B
48 52anti-parallel
Strand 7
B
78 91first strand
Strand 8
B
10 16anti-parallel
Strand 9
B
94 103first strand
Strand 10
B
64 67parallel
Strand 11
B
146 149first strand
Strand 12
B
78 91anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
33 38anti-parallel
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There are 12 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 16first strand
Strand 2
C
78 91anti-parallel
Strand 3
C
48 52first strand
Strand 4
C
10 16anti-parallel
Strand 5
C
64 67first strand
Strand 6
C
48 52anti-parallel
Strand 7
C
78 91first strand
Strand 8
C
10 16anti-parallel
Strand 9
C
94 103first strand
Strand 10
C
64 67parallel
Strand 11
C
146 149first strand
Strand 12
C
78 91anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
33 38anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il