Analysis of interatomic Contacts of Structural Units in PDB entry:
2UYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UYG entry

There are 12 chains in PDB entry 2UYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 142
B
 MET 1LEU 142
C
 MET 1LEU 142
D
 MET 1LEU 142
E
 MET 1LEU 142
F
 MET 1LEU 142
G
 MET 1LEU 142
H
 MET 1LEU 142
I
 MET 1LEU 142
J
 MET 1LEU 142
K
 MET 1LEU 142
L
 MET 1LEU 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are110 helices in PDB entry 2UYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
25 40Right-handed alpha
Helix 3
3
A
51 62Right-handed alpha
Helix 4
4
A
74 80Right-handed 310
Helix 5
5
A
81 90Right-handed alpha
Helix 6
6
A
102 106Right-handed 310
Helix 7
7
A
107 112Right-handed 310
Helix 8
8
A
115 119Right-handed 310
Helix 9
9
A
128 141Right-handed alpha
Helix 10
10
B
9 13Right-handed 310
Helix 11
11
B
25 40Right-handed alpha
Helix 12
12
B
51 62Right-handed alpha
Helix 13
13
B
63 66Right-handed 310
Helix 14
14
B
74 80Right-handed 310
Helix 15
15
B
81 90Right-handed alpha
Helix 16
16
B
102 106Right-handed 310
Helix 17
17
B
107 112Right-handed 310
Helix 18
18
B
115 119Right-handed 310
Helix 19
19
B
128 141Right-handed alpha
Helix 20
20
C
9 13Right-handed 310
Helix 21
21
C
25 40Right-handed alpha
Helix 22
22
C
51 62Right-handed alpha
Helix 23
23
C
74 80Right-handed 310
Helix 24
24
C
81 90Right-handed alpha
Helix 25
25
C
102 106Right-handed 310
Helix 26
26
C
107 112Right-handed 310
Helix 27
27
C
115 119Right-handed 310
Helix 28
28
C
128 141Right-handed alpha
Helix 29
29
D
9 13Right-handed 310
Helix 30
30
D
25 40Right-handed alpha
Helix 31
31
D
51 66Right-handed alpha
Helix 32
32
D
74 80Right-handed 310
Helix 33
33
D
81 90Right-handed alpha
Helix 34
34
D
102 106Right-handed 310
Helix 35
35
D
107 112Right-handed 310
Helix 36
36
D
115 119Right-handed 310
Helix 37
37
D
128 141Right-handed alpha
Helix 38
38
E
9 13Right-handed 310
Helix 39
39
E
25 39Right-handed alpha
Helix 40
40
E
51 62Right-handed alpha
Helix 41
41
E
74 80Right-handed 310
Helix 42
42
E
81 91Right-handed alpha
Helix 43
43
E
102 106Right-handed 310
Helix 44
44
E
107 112Right-handed 310
Helix 45
45
E
115 119Right-handed 310
Helix 46
46
E
128 141Right-handed alpha
Helix 47
47
F
9 13Right-handed 310
Helix 48
48
F
25 40Right-handed alpha
Helix 49
49
F
51 62Right-handed alpha
Helix 50
50
F
74 80Right-handed 310
Helix 51
51
F
81 90Right-handed alpha
Helix 52
52
F
102 106Right-handed 310
Helix 53
53
F
107 112Right-handed 310
Helix 54
54
F
115 119Right-handed 310
Helix 55
55
F
128 141Right-handed alpha
Helix 56
56
G
9 13Right-handed 310
Helix 57
57
G
25 40Right-handed alpha
Helix 58
58
G
51 62Right-handed alpha
Helix 59
59
G
63 65Right-handed 310
Helix 60
60
G
74 80Right-handed 310
Helix 61
61
G
81 90Right-handed alpha
Helix 62
62
G
102 106Right-handed 310
Helix 63
63
G
107 112Right-handed 310
Helix 64
64
G
115 119Right-handed 310
Helix 65
65
G
128 141Right-handed alpha
Helix 66
66
H
9 13Right-handed 310
Helix 67
67
H
25 40Right-handed alpha
Helix 68
68
H
51 62Right-handed alpha
Helix 69
69
H
74 80Right-handed 310
Helix 70
70
H
81 90Right-handed alpha
Helix 71
71
H
102 106Right-handed 310
Helix 72
72
H
107 112Right-handed 310
Helix 73
73
H
115 119Right-handed 310
Helix 74
74
H
128 141Right-handed alpha
Helix 75
75
I
9 13Right-handed 310
Helix 76
76
I
25 40Right-handed alpha
Helix 77
77
I
51 62Right-handed alpha
Helix 78
78
I
74 80Right-handed 310
Helix 79
79
I
81 90Right-handed alpha
Helix 80
80
I
102 106Right-handed 310
Helix 81
81
I
107 112Right-handed 310
Helix 82
82
I
115 119Right-handed 310
Helix 83
83
I
128 141Right-handed alpha
Helix 84
84
J
9 13Right-handed 310
Helix 85
85
J
25 40Right-handed alpha
Helix 86
86
J
51 62Right-handed alpha
Helix 87
87
J
74 80Right-handed 310
Helix 88
88
J
81 90Right-handed alpha
Helix 89
89
J
102 106Right-handed 310
Helix 90
90
J
107 112Right-handed 310
Helix 91
91
J
115 119Right-handed 310
Helix 92
92
J
128 141Right-handed alpha
Helix 93
93
K
9 13Right-handed 310
Helix 94
94
K
25 40Right-handed alpha
Helix 95
95
K
51 62Right-handed alpha
Helix 96
96
K
74 80Right-handed 310
Helix 97
97
K
81 91Right-handed alpha
Helix 98
98
K
102 106Right-handed 310
Helix 99
99
K
107 112Right-handed 310
Helix 100
100
K
115 119Right-handed 310
Helix 101
101
K
128 141Right-handed alpha
Helix 102
102
L
9 13Right-handed 310
Helix 103
103
L
25 39Right-handed alpha
Helix 104
104
L
51 62Right-handed alpha
Helix 105
105
L
74 80Right-handed 310
Helix 106
106
L
81 90Right-handed alpha
Helix 107
107
L
102 106Right-handed 310
Helix 108
108
L
107 112Right-handed 310
Helix 109
109
L
115 119Right-handed 310
Helix 110
110
L
128 141Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2UYG. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, FA, GA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
2 6parallel
Strand 3
A
69 73parallel
Strand 4
A
95 99parallel
Strand 5
A
121 124parallel
Strand 6
E
121 124anti-parallel
Strand 7
E
95 99parallel
Strand 8
E
69 73parallel
Strand 9
E
2 6parallel
Strand 10
E
44 48parallel
Back to list of sheets
Back to top of page

There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
2 6parallel
Strand 3
B
69 73parallel
Strand 4
B
95 99parallel
Strand 5
B
121 124parallel
Strand 6
H
121 124anti-parallel
Strand 7
H
95 99parallel
Strand 8
H
69 73parallel
Strand 9
H
2 6parallel
Strand 10
H
44 48parallel
Back to list of sheets
Back to top of page

There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 48first strand
Strand 2
C
2 6parallel
Strand 3
C
69 73parallel
Strand 4
C
95 99parallel
Strand 5
C
121 124parallel
Strand 6
J
121 124anti-parallel
Strand 7
J
95 99parallel
Strand 8
J
69 73parallel
Strand 9
J
2 6parallel
Strand 10
J
44 48parallel
Back to list of sheets
Back to top of page

There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 48first strand
Strand 2
D
2 6parallel
Strand 3
D
69 73parallel
Strand 4
D
95 99parallel
Strand 5
D
121 124parallel
Strand 6
I
121 124anti-parallel
Strand 7
I
95 99parallel
Strand 8
I
69 73parallel
Strand 9
I
2 6parallel
Strand 10
I
44 48parallel
Back to list of sheets
Back to top of page

There are 10 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 48first strand
Strand 2
F
2 6parallel
Strand 3
F
69 73parallel
Strand 4
F
95 99parallel
Strand 5
F
121 124parallel
Strand 6
L
121 124anti-parallel
Strand 7
L
95 99parallel
Strand 8
L
69 73parallel
Strand 9
L
2 6parallel
Strand 10
L
44 48parallel
Back to list of sheets
Back to top of page

There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 48first strand
Strand 2
G
2 6parallel
Strand 3
G
69 73parallel
Strand 4
G
95 99parallel
Strand 5
G
121 124parallel
Strand 6
K
121 124anti-parallel
Strand 7
K
95 99parallel
Strand 8
K
69 73parallel
Strand 9
K
2 6parallel
Strand 10
K
44 48parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il