Analysis of interatomic Contacts of Structural Units in PDB entry:
2UYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2UYL entry

There are 8 chains in PDB entry 2UYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	GLU 218
B	GLN 1	ASP 220
M	GLU 1	ARG 216
N	GLN 1	ASP 220
V	GLU 1	ARG 216
W	GLN 1	ASP 220
X	GLU 1	ARG 216
Y	GLN 1	ASP 220

There are 35 helices in PDB entry 2UYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	84	88	Right-handed 310
Helix 2	2	A	126	132	Right-handed alpha
Helix 3	3	A	188	194	Right-handed alpha
Helix 4	4	B	28	32	Right-handed 310
Helix 5	5	B	62	65	Right-handed 310
Helix 6	6	B	74	76	Right-handed 310
Helix 7	7	B	87	91	Right-handed 310
Helix 8	8	B	162	164	Right-handed 310
Helix 9	9	B	206	209	Right-handed 310
Helix 10	10	M	84	88	Right-handed 310
Helix 11	11	M	126	132	Right-handed alpha
Helix 12	12	M	188	194	Right-handed alpha
Helix 13	13	N	28	32	Right-handed 310
Helix 14	14	N	62	65	Right-handed 310
Helix 15	15	N	87	91	Right-handed 310
Helix 16	16	N	162	164	Right-handed 310
Helix 17	17	N	206	209	Right-handed 310
Helix 18	18	V	84	88	Right-handed 310
Helix 19	19	V	126	132	Right-handed alpha
Helix 20	20	V	188	194	Right-handed alpha
Helix 21	21	W	28	32	Right-handed 310
Helix 22	22	W	62	65	Right-handed 310
Helix 23	23	W	74	76	Right-handed 310
Helix 24	24	W	87	91	Right-handed 310
Helix 25	25	W	162	164	Right-handed 310
Helix 26	26	W	206	209	Right-handed 310
Helix 27	27	X	84	88	Right-handed 310
Helix 28	28	X	126	132	Right-handed alpha
Helix 29	29	X	188	194	Right-handed alpha
Helix 30	30	Y	28	32	Right-handed 310
Helix 31	31	Y	62	65	Right-handed 310
Helix 32	32	Y	74	76	Right-handed 310
Helix 33	33	Y	87	91	Right-handed 310
Helix 34	34	Y	162	164	Right-handed 310
Helix 35	35	Y	206	209	Right-handed 310

There are 35 sheets in PDB entry 2UYL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, BF, MA, MB, MC, MD, NA, NB, NC, ND, VA, VB, VC, VD, WA, WB, WC, WD, XA, XB, XC, XD, YA, YB, YC, YD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	107	112	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	38	43	anti-parallel
Strand 5	A	50	54	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	107	112	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	102	103	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	134	144	anti-parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	164	168	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	206	215	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	104	109	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	180	190	anti-parallel
Strand 4	B	169	171	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	180	190	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	210	215	anti-parallel

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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	75	80	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 9 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	107	112	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	58	59	first strand
Strand 5	M	50	54	anti-parallel
Strand 6	M	38	43	anti-parallel
Strand 7	M	89	95	anti-parallel
Strand 8	M	102	103	anti-parallel
Strand 9	M	89	95	anti-parallel

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There are 4 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	123	first strand
Strand 2	M	134	144	anti-parallel
Strand 3	M	178	187	anti-parallel
Strand 4	M	164	168	anti-parallel

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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	158	159	first strand
Strand 2	M	150	155	anti-parallel
Strand 3	M	196	203	anti-parallel
Strand 4	M	206	215	anti-parallel

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There are 4 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	5	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 9 strands in NB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	113	117	parallel
Strand 3	N	92	100	anti-parallel
Strand 4	N	58	60	first strand
Strand 5	N	45	51	anti-parallel
Strand 6	N	34	39	anti-parallel
Strand 7	N	92	100	anti-parallel
Strand 8	N	104	109	anti-parallel
Strand 9	N	92	100	anti-parallel

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There are 7 strands in NC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	126	130	first strand
Strand 2	N	141	151	anti-parallel
Strand 3	N	180	190	anti-parallel
Strand 4	N	169	171	anti-parallel
Strand 5	N	180	190	anti-parallel
Strand 6	N	175	177	anti-parallel
Strand 7	N	180	190	anti-parallel

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There are 3 strands in ND sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	157	160	first strand
Strand 2	N	200	205	anti-parallel
Strand 3	N	210	215	anti-parallel

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There are 4 strands in VA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	19	25	anti-parallel
Strand 3	V	75	80	anti-parallel
Strand 4	V	67	72	anti-parallel

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There are 9 strands in VB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	14	first strand
Strand 2	V	107	112	parallel
Strand 3	V	89	95	anti-parallel
Strand 4	V	58	59	first strand
Strand 5	V	50	54	anti-parallel
Strand 6	V	38	43	anti-parallel
Strand 7	V	89	95	anti-parallel
Strand 8	V	102	103	anti-parallel
Strand 9	V	89	95	anti-parallel

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There are 4 strands in VC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	119	123	first strand
Strand 2	V	134	144	anti-parallel
Strand 3	V	178	187	anti-parallel
Strand 4	V	164	168	anti-parallel

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There are 4 strands in VD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	158	160	first strand
Strand 2	V	150	155	anti-parallel
Strand 3	V	196	203	anti-parallel
Strand 4	V	206	215	anti-parallel

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There are 4 strands in WA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	5	first strand
Strand 2	W	18	25	anti-parallel
Strand 3	W	78	83	anti-parallel
Strand 4	W	68	73	anti-parallel

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There are 9 strands in WB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	9	12	first strand
Strand 2	W	113	117	parallel
Strand 3	W	92	100	anti-parallel
Strand 4	W	58	60	first strand
Strand 5	W	46	51	anti-parallel
Strand 6	W	34	39	anti-parallel
Strand 7	W	92	100	anti-parallel
Strand 8	W	104	109	anti-parallel
Strand 9	W	92	100	anti-parallel

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There are 7 strands in WC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	126	130	first strand
Strand 2	W	141	151	anti-parallel
Strand 3	W	180	190	anti-parallel
Strand 4	W	169	171	anti-parallel
Strand 5	W	180	190	anti-parallel
Strand 6	W	175	177	anti-parallel
Strand 7	W	180	190	anti-parallel

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There are 3 strands in WD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	157	160	first strand
Strand 2	W	200	205	anti-parallel
Strand 3	W	210	215	anti-parallel

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There are 4 strands in XA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	19	25	anti-parallel
Strand 3	X	75	80	anti-parallel
Strand 4	X	67	72	anti-parallel

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There are 9 strands in XB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	14	first strand
Strand 2	X	107	112	parallel
Strand 3	X	89	95	anti-parallel
Strand 4	X	58	59	first strand
Strand 5	X	50	54	anti-parallel
Strand 6	X	38	43	anti-parallel
Strand 7	X	89	95	anti-parallel
Strand 8	X	102	103	anti-parallel
Strand 9	X	89	95	anti-parallel

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There are 4 strands in XC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	119	123	first strand
Strand 2	X	134	144	anti-parallel
Strand 3	X	178	187	anti-parallel
Strand 4	X	164	168	anti-parallel

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There are 4 strands in XD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	158	159	first strand
Strand 2	X	150	155	anti-parallel
Strand 3	X	196	203	anti-parallel
Strand 4	X	206	215	anti-parallel

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There are 4 strands in YA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	3	5	first strand
Strand 2	Y	18	25	anti-parallel
Strand 3	Y	78	83	anti-parallel
Strand 4	Y	68	73	anti-parallel

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There are 9 strands in YB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	9	12	first strand
Strand 2	Y	113	117	parallel
Strand 3	Y	92	100	anti-parallel
Strand 4	Y	58	60	first strand
Strand 5	Y	45	51	anti-parallel
Strand 6	Y	34	39	anti-parallel
Strand 7	Y	92	100	anti-parallel
Strand 8	Y	104	109	anti-parallel
Strand 9	Y	92	100	anti-parallel

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There are 7 strands in YC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	126	130	first strand
Strand 2	Y	141	151	anti-parallel
Strand 3	Y	180	190	anti-parallel
Strand 4	Y	169	171	anti-parallel
Strand 5	Y	180	190	anti-parallel
Strand 6	Y	175	177	anti-parallel
Strand 7	Y	180	190	anti-parallel

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There are 3 strands in YD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	157	160	first strand
Strand 2	Y	200	205	anti-parallel
Strand 3	Y	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2UYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
2UYL