Analysis of interatomic Contacts of Structural Units in PDB entry:
2UYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UYO entry

There is 1 chain in PDB entry 2UYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14LEU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2UYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
40 47Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
70 101Right-handed alpha
Helix 5
5
A
115 120Right-handed alpha
Helix 6
6
A
133 147Right-handed alpha
Helix 7
7
A
165 173Right-handed alpha
Helix 8
8
A
188 192Right-handed 310
Helix 9
9
A
193 207Right-handed alpha
Helix 10
10
A
224 239Right-handed alpha
Helix 11
11
A
261 267Right-handed alpha
Helix 12
12
A
278 285Right-handed alpha
Helix 13
13
A
297 301Right-handed 310
Back to top of page

There is 1 sheet ( AA) in PDB entry 2UYO.

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
127 132parallel
Strand 3
A
105 109parallel
Strand 4
A
181 185parallel
Strand 5
A
213 217parallel
Strand 6
A
303 309anti-parallel
Strand 7
A
271 277anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il