Analysis of interatomic Contacts of Structural Units in PDB entry:
2UZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UZP entry

There are 3 chains in PDB entry 2UZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ALA 293
B
 MET 0ALA 293
C
 MET 0ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2UZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
232 237Right-handed 310
Helix 2
2
A
263 269Right-handed alpha
Helix 3
3
A
279 284Right-handed alpha
Helix 4
4
B
232 237Right-handed 310
Helix 5
5
B
263 269Right-handed alpha
Helix 6
6
B
279 284Right-handed alpha
Helix 7
7
C
232 237Right-handed 310
Helix 8
8
C
263 267Right-handed alpha
Helix 9
9
C
279 284Right-handed alpha
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There are 6 sheets in PDB entry 2UZP. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 230first strand
Strand 2
A
172 181anti-parallel
Strand 3
A
160 169anti-parallel
Strand 4
A
271 276anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
239 246anti-parallel
Strand 4
A
254 262anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 230first strand
Strand 2
B
172 181anti-parallel
Strand 3
B
160 169anti-parallel
Strand 4
B
271 276anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
194 201anti-parallel
Strand 3
B
239 246anti-parallel
Strand 4
B
254 262anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 230first strand
Strand 2
C
172 181anti-parallel
Strand 3
C
160 169anti-parallel
Strand 4
C
271 276anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
C
194 201anti-parallel
Strand 3
C
239 246anti-parallel
Strand 4
C
254 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il