Analysis of interatomic Contacts of Structural Units in PDB entry:
2UZY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2UZY entry

There are 4 chains in PDB entry 2UZY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 35	LYS 320
B	GLN 42	ASP 741
C	MET 35	LYS 320
D	GLN 42	ASP 741

There are 32 helices in PDB entry 2UZY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	48	Right-handed alpha
Helix 2	2	A	50	61	Right-handed alpha
Helix 3	3	A	71	77	Right-handed alpha
Helix 4	4	A	93	97	Right-handed 310
Helix 5	5	A	114	119	Right-handed 310
Helix 6	6	A	134	139	Right-handed 310
Helix 7	7	A	157	163	Right-handed 310
Helix 8	8	A	179	185	Right-handed 310
Helix 9	9	A	201	207	Right-handed 310
Helix 10	10	A	223	229	Right-handed 310
Helix 11	11	B	238	242	Right-handed 310
Helix 12	12	B	328	333	Right-handed alpha
Helix 13	13	B	367	374	Right-handed alpha
Helix 14	14	B	525	531	Right-handed alpha
Helix 15	15	B	549	551	Right-handed 310
Helix 16	16	B	614	617	Right-handed 310
Helix 17	17	C	44	48	Right-handed alpha
Helix 18	18	C	50	61	Right-handed alpha
Helix 19	19	C	71	77	Right-handed alpha
Helix 20	20	C	93	97	Right-handed 310
Helix 21	21	C	114	119	Right-handed 310
Helix 22	22	C	134	139	Right-handed 310
Helix 23	23	C	157	163	Right-handed 310
Helix 24	24	C	179	185	Right-handed 310
Helix 25	25	C	201	207	Right-handed 310
Helix 26	26	C	223	229	Right-handed 310
Helix 27	27	D	238	242	Right-handed 310
Helix 28	28	D	328	333	Right-handed alpha
Helix 29	29	D	367	374	Right-handed alpha
Helix 30	30	D	525	531	Right-handed alpha
Helix 31	31	D	549	551	Right-handed 310
Helix 32	32	D	614	617	Right-handed 310

There are 40 sheets in PDB entry 2UZY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, CA, CB, CC, CD, A, DB, C, DD, DE, DF, G, DH, DI, DJ, DK, DL, DM, DN, DO, DP,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	69	70	anti-parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	102	104	parallel
Strand 3	A	124	126	parallel
Strand 4	A	146	148	parallel
Strand 5	A	168	170	parallel
Strand 6	A	190	191	parallel
Strand 7	A	212	214	parallel
Strand 8	A	234	236	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	256	first strand
Strand 2	A	282	286	anti-parallel
Strand 3	A	276	279	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	293	304	anti-parallel
Strand 3	A	307	318	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	79	85	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	112	113	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	129	133	anti-parallel
Strand 3	B	141	145	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	187	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	187	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	226	227	anti-parallel

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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	255	first strand
Strand 2	B	258	264	anti-parallel
Strand 3	B	277	281	anti-parallel
Strand 4	B	292	299	anti-parallel
Strand 5	B	424	427	parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	323	first strand
Strand 2	B	341	347	anti-parallel
Strand 3	B	363	366	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	444	first strand
Strand 2	B	451	457	anti-parallel
Strand 3	B	461	467	anti-parallel
Strand 4	B	477	480	anti-parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	493	first strand
Strand 2	B	501	506	anti-parallel
Strand 3	B	509	514	anti-parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	547	first strand
Strand 2	B	538	541	anti-parallel
Strand 3	B	556	557	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	569	first strand
Strand 2	B	580	586	anti-parallel
Strand 3	B	621	625	anti-parallel
Strand 4	B	611	612	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	591	first strand
Strand 2	B	596	597	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	609	first strand
Strand 2	B	602	605	anti-parallel
Strand 3	B	638	641	anti-parallel
Strand 4	B	646	649	anti-parallel

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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	663	first strand
Strand 2	B	674	680	anti-parallel
Strand 3	B	706	710	anti-parallel
Strand 4	B	698	701	anti-parallel

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There are 3 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	B	736	738	parallel
Strand 3	B	719	720	anti-parallel

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There are 2 strands in BP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	692	first strand
Strand 2	B	722	723	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	69	70	anti-parallel

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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	102	104	parallel
Strand 3	C	124	126	parallel
Strand 4	C	146	148	parallel
Strand 5	C	168	170	parallel
Strand 6	C	190	191	parallel
Strand 7	C	212	214	parallel
Strand 8	C	234	236	parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	256	first strand
Strand 2	C	282	286	anti-parallel
Strand 3	C	276	279	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	293	304	anti-parallel
Strand 3	C	307	318	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	57	first strand
Strand 2	D	62	66	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	79	85	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	112	113	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	129	133	anti-parallel
Strand 3	D	141	145	anti-parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	187	first strand
Strand 2	D	194	199	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	234	235	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	187	first strand
Strand 2	D	194	199	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	226	227	anti-parallel

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There are 5 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	255	first strand
Strand 2	D	258	264	anti-parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	292	299	anti-parallel
Strand 5	D	424	427	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	323	first strand
Strand 2	D	341	347	anti-parallel
Strand 3	D	363	366	anti-parallel

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There are 4 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	444	first strand
Strand 2	D	451	457	anti-parallel
Strand 3	D	461	467	anti-parallel
Strand 4	D	477	480	anti-parallel

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There are 3 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	493	first strand
Strand 2	D	501	506	anti-parallel
Strand 3	D	509	514	anti-parallel

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There are 3 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	547	first strand
Strand 2	D	538	541	anti-parallel
Strand 3	D	556	557	anti-parallel

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There are 4 strands in DK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	569	first strand
Strand 2	D	580	586	anti-parallel
Strand 3	D	621	625	anti-parallel
Strand 4	D	611	612	anti-parallel

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There are 2 strands in DL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	591	first strand
Strand 2	D	596	597	anti-parallel

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There are 4 strands in DM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	608	609	first strand
Strand 2	D	602	605	anti-parallel
Strand 3	D	638	641	anti-parallel
Strand 4	D	646	649	anti-parallel

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There are 4 strands in DN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	663	first strand
Strand 2	D	674	680	anti-parallel
Strand 3	D	706	710	anti-parallel
Strand 4	D	698	701	anti-parallel

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There are 3 strands in DO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	666	667	first strand
Strand 2	D	736	738	parallel
Strand 3	D	719	720	anti-parallel

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There are 2 strands in DP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	691	692	first strand
Strand 2	D	722	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2UZY

Analysis of interatomic Contacts of Structural Units in PDB entry:
2UZY