Analysis of interatomic Contacts of Structural Units in PDB entry:
2V09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V09 entry

There is 1 chain in PDB entry 2V09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6LYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2V09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 31Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
168 174Right-handed alpha
Helix 5
5
A
176 185Right-handed alpha
Helix 6
6
A
188 192Right-handed 310
Helix 7
7
A
209 214Right-handed alpha
Helix 8
8
A
231 233Right-handed 310
Helix 9
9
A
345 351Right-handed alpha
Helix 10
10
A
353 362Right-handed alpha
Helix 11
11
A
364 369Right-handed alpha
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There are 6 sheets in PDB entry 2V09. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
15 16anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
309 313anti-parallel
Strand 3
A
280 286anti-parallel
Strand 4
A
329 335anti-parallel
Strand 5
A
258 264anti-parallel
Strand 6
A
241 246anti-parallel
Strand 7
A
236 238anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
140 155anti-parallel
Strand 5
A
91 96anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
140 155anti-parallel
Strand 5
A
101 115anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 306first strand
Strand 2
A
288 296anti-parallel
Strand 3
A
318 323anti-parallel
Strand 4
A
268 274anti-parallel
Strand 5
A
378 380anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 306first strand
Strand 2
A
288 296anti-parallel
Strand 3
A
318 323anti-parallel
Strand 4
A
268 274anti-parallel
Strand 5
A
343 344anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il