Analysis of interatomic Contacts of Structural Units in PDB entry:
2V0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V0R entry

There are 2 chains in PDB entry 2V0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ARG 240
B
 SER 6LEU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2V0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 35Right-handed alpha
Helix 2
2
A
49 54Right-handed 310
Helix 3
3
A
120 132Right-handed alpha
Helix 4
4
A
133 136Right-handed 310
Helix 5
5
A
151 155Right-handed 310
Helix 6
6
A
162 175Right-handed alpha
Helix 7
7
A
180 185Right-handed alpha
Helix 8
8
A
214 217Right-handed 310
Helix 9
9
B
20 35Right-handed alpha
Helix 10
10
B
49 54Right-handed 310
Helix 11
11
B
120 132Right-handed alpha
Helix 12
12
B
133 136Right-handed 310
Helix 13
13
B
151 155Right-handed 310
Helix 14
14
B
162 175Right-handed alpha
Helix 15
15
B
180 185Right-handed alpha
Helix 16
16
B
214 219Right-handed 310
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There are 6 sheets in PDB entry 2V0R. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
8 14parallel
Strand 5
A
234 239anti-parallel
Strand 6
A
219 225anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
140 145parallel
Strand 5
A
207 212anti-parallel
Strand 6
A
177 179anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
200 204anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
74 78anti-parallel
Strand 3
B
38 42anti-parallel
Strand 4
B
8 14parallel
Strand 5
B
234 239anti-parallel
Strand 6
B
222 225anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 91first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
107 115anti-parallel
Strand 4
B
140 145parallel
Strand 5
B
207 212anti-parallel
Strand 6
B
177 179anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
200 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il