Analysis of interatomic Contacts of Structural Units in PDB entry:
2V0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V0T entry

There are 8 chains in PDB entry 2V0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLN 250
B	SER 2	GLN 250
C	SER 2	GLN 250
D	SER 2	GLN 250
E	SER 2	GLN 250
F	SER 2	GLN 250
G	SER 2	GLN 250
H	SER 2	GLN 250

There are112 helices in PDB entry 2V0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	31	Right-handed alpha
Helix 2	2	A	44	46	Right-handed 310
Helix 3	3	A	47	55	Right-handed alpha
Helix 4	4	A	79	86	Right-handed alpha
Helix 5	5	A	95	102	Right-handed alpha
Helix 6	6	A	105	120	Right-handed alpha
Helix 7	7	A	130	136	Right-handed alpha
Helix 8	8	A	138	153	Right-handed alpha
Helix 9	9	A	155	160	Right-handed 310
Helix 10	10	A	179	199	Right-handed alpha
Helix 11	11	A	199	206	Right-handed alpha
Helix 12	12	A	218	224	Right-handed alpha
Helix 13	13	A	234	240	Right-handed 310
Helix 14	14	A	241	248	Right-handed alpha
Helix 15	15	B	17	30	Right-handed alpha
Helix 16	16	B	44	46	Right-handed 310
Helix 17	17	B	47	55	Right-handed alpha
Helix 18	18	B	79	86	Right-handed alpha
Helix 19	19	B	95	102	Right-handed alpha
Helix 20	20	B	105	119	Right-handed alpha
Helix 21	21	B	130	136	Right-handed alpha
Helix 22	22	B	138	153	Right-handed alpha
Helix 23	23	B	155	160	Right-handed 310
Helix 24	24	B	168	172	Right-handed 310
Helix 25	25	B	179	198	Right-handed alpha
Helix 26	26	B	199	206	Right-handed alpha
Helix 27	27	B	218	225	Right-handed alpha
Helix 28	28	B	234	240	Right-handed 310
Helix 29	29	B	241	248	Right-handed alpha
Helix 30	30	C	17	30	Right-handed alpha
Helix 31	31	C	44	46	Right-handed 310
Helix 32	32	C	47	55	Right-handed alpha
Helix 33	33	C	79	86	Right-handed alpha
Helix 34	34	C	95	102	Right-handed alpha
Helix 35	35	C	105	119	Right-handed alpha
Helix 36	36	C	130	136	Right-handed alpha
Helix 37	37	C	138	153	Right-handed alpha
Helix 38	38	C	155	160	Right-handed 310
Helix 39	39	C	179	198	Right-handed alpha
Helix 40	40	C	199	206	Right-handed alpha
Helix 41	41	C	218	224	Right-handed alpha
Helix 42	42	C	234	240	Right-handed 310
Helix 43	43	C	241	248	Right-handed alpha
Helix 44	44	D	17	30	Right-handed alpha
Helix 45	45	D	47	55	Right-handed alpha
Helix 46	46	D	79	86	Right-handed alpha
Helix 47	47	D	95	102	Right-handed alpha
Helix 48	48	D	105	119	Right-handed alpha
Helix 49	49	D	130	136	Right-handed alpha
Helix 50	50	D	138	153	Right-handed alpha
Helix 51	51	D	155	160	Right-handed 310
Helix 52	52	D	168	172	Right-handed 310
Helix 53	53	D	179	198	Right-handed alpha
Helix 54	54	D	199	206	Right-handed alpha
Helix 55	55	D	218	224	Right-handed alpha
Helix 56	56	D	234	240	Right-handed 310
Helix 57	57	D	241	248	Right-handed alpha
Helix 58	58	E	17	30	Right-handed alpha
Helix 59	59	E	47	55	Right-handed alpha
Helix 60	60	E	79	86	Right-handed alpha
Helix 61	61	E	95	102	Right-handed alpha
Helix 62	62	E	105	119	Right-handed alpha
Helix 63	63	E	130	136	Right-handed alpha
Helix 64	64	E	138	153	Right-handed alpha
Helix 65	65	E	155	160	Right-handed 310
Helix 66	66	E	179	198	Right-handed alpha
Helix 67	67	E	199	206	Right-handed alpha
Helix 68	68	E	218	224	Right-handed alpha
Helix 69	69	E	234	240	Right-handed 310
Helix 70	70	E	241	248	Right-handed alpha
Helix 71	71	F	17	30	Right-handed alpha
Helix 72	72	F	44	46	Right-handed 310
Helix 73	73	F	47	55	Right-handed alpha
Helix 74	74	F	79	86	Right-handed alpha
Helix 75	75	F	95	102	Right-handed alpha
Helix 76	76	F	105	119	Right-handed alpha
Helix 77	77	F	130	136	Right-handed alpha
Helix 78	78	F	138	153	Right-handed alpha
Helix 79	79	F	155	160	Right-handed 310
Helix 80	80	F	179	198	Right-handed alpha
Helix 81	81	F	199	206	Right-handed alpha
Helix 82	82	F	218	224	Right-handed alpha
Helix 83	83	F	234	240	Right-handed 310
Helix 84	84	F	241	248	Right-handed alpha
Helix 85	85	G	17	30	Right-handed alpha
Helix 86	86	G	44	46	Right-handed 310
Helix 87	87	G	47	55	Right-handed alpha
Helix 88	88	G	79	86	Right-handed alpha
Helix 89	89	G	95	102	Right-handed alpha
Helix 90	90	G	105	119	Right-handed alpha
Helix 91	91	G	130	136	Right-handed alpha
Helix 92	92	G	138	152	Right-handed alpha
Helix 93	93	G	155	160	Right-handed 310
Helix 94	94	G	179	198	Right-handed alpha
Helix 95	95	G	199	206	Right-handed alpha
Helix 96	96	G	218	224	Right-handed alpha
Helix 97	97	G	234	240	Right-handed 310
Helix 98	98	G	241	248	Right-handed alpha
Helix 99	99	H	17	31	Right-handed alpha
Helix 100	100	H	44	46	Right-handed 310
Helix 101	101	H	47	55	Right-handed alpha
Helix 102	102	H	79	86	Right-handed alpha
Helix 103	103	H	95	102	Right-handed alpha
Helix 104	104	H	105	119	Right-handed alpha
Helix 105	105	H	130	136	Right-handed alpha
Helix 106	106	H	138	153	Right-handed alpha
Helix 107	107	H	155	160	Right-handed 310
Helix 108	108	H	179	198	Right-handed alpha
Helix 109	109	H	199	206	Right-handed alpha
Helix 110	110	H	218	224	Right-handed alpha
Helix 111	111	H	234	240	Right-handed 310
Helix 112	112	H	241	248	Right-handed alpha

There are 8 sheets in PDB entry 2V0T. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, EA, FA, GA, HA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	38	42	parallel
Strand 3	A	60	64	parallel
Strand 4	A	90	93	parallel
Strand 5	A	122	127	parallel
Strand 6	A	162	166	parallel
Strand 7	A	208	210	parallel
Strand 8	A	230	233	parallel
Strand 9	A	7	11	parallel
Strand 10	A	7	11	first strand

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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	38	43	parallel
Strand 3	B	60	64	parallel
Strand 4	B	90	93	parallel
Strand 5	B	122	127	parallel
Strand 6	B	162	166	parallel
Strand 7	B	208	210	parallel
Strand 8	B	230	233	parallel
Strand 9	B	7	11	parallel
Strand 10	B	7	11	first strand

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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	38	42	parallel
Strand 3	C	60	64	parallel
Strand 4	C	90	93	parallel
Strand 5	C	122	127	parallel
Strand 6	C	162	166	parallel
Strand 7	C	208	210	parallel
Strand 8	C	230	233	parallel
Strand 9	C	38	42	first strand
Strand 10	C	7	11	parallel
Strand 11	C	60	64	first strand
Strand 12	C	38	42	parallel
Strand 13	C	90	93	first strand
Strand 14	C	60	64	parallel
Strand 15	C	122	127	first strand
Strand 16	C	90	93	parallel
Strand 17	C	162	166	first strand
Strand 18	C	122	127	parallel
Strand 19	C	208	210	first strand
Strand 20	C	162	166	parallel
Strand 21	C	230	233	first strand
Strand 22	C	7	11	parallel

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There are 16 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	38	42	parallel
Strand 3	D	38	42	first strand
Strand 4	D	7	11	parallel
Strand 5	D	60	64	first strand
Strand 6	D	38	42	parallel
Strand 7	D	90	93	first strand
Strand 8	D	60	64	parallel
Strand 9	D	122	127	first strand
Strand 10	D	90	93	parallel
Strand 11	D	162	166	first strand
Strand 12	D	122	127	parallel
Strand 13	D	208	210	first strand
Strand 14	D	162	166	parallel
Strand 15	D	230	233	first strand
Strand 16	D	7	11	parallel

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There are 16 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	38	42	parallel
Strand 3	E	38	42	first strand
Strand 4	E	7	11	parallel
Strand 5	E	60	64	first strand
Strand 6	E	38	42	parallel
Strand 7	E	90	93	first strand
Strand 8	E	60	64	parallel
Strand 9	E	122	127	first strand
Strand 10	E	90	93	parallel
Strand 11	E	162	166	first strand
Strand 12	E	122	127	parallel
Strand 13	E	208	210	first strand
Strand 14	E	162	166	parallel
Strand 15	E	230	233	first strand
Strand 16	E	7	11	parallel

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There are 16 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	38	42	parallel
Strand 3	F	38	42	first strand
Strand 4	F	7	11	parallel
Strand 5	F	60	64	first strand
Strand 6	F	38	42	parallel
Strand 7	F	90	93	first strand
Strand 8	F	60	64	parallel
Strand 9	F	122	127	first strand
Strand 10	F	90	93	parallel
Strand 11	F	162	166	first strand
Strand 12	F	122	127	parallel
Strand 13	F	208	210	first strand
Strand 14	F	162	166	parallel
Strand 15	F	230	233	first strand
Strand 16	F	7	11	parallel

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There are 16 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	11	first strand
Strand 2	G	38	42	parallel
Strand 3	G	38	42	first strand
Strand 4	G	7	11	parallel
Strand 5	G	60	64	first strand
Strand 6	G	38	42	parallel
Strand 7	G	90	93	first strand
Strand 8	G	60	64	parallel
Strand 9	G	122	127	first strand
Strand 10	G	90	93	parallel
Strand 11	G	162	166	first strand
Strand 12	G	122	127	parallel
Strand 13	G	208	210	first strand
Strand 14	G	162	166	parallel
Strand 15	G	230	233	first strand
Strand 16	G	7	11	parallel

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There are 16 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	11	first strand
Strand 2	H	38	42	parallel
Strand 3	H	38	42	first strand
Strand 4	H	7	11	parallel
Strand 5	H	60	64	first strand
Strand 6	H	38	42	parallel
Strand 7	H	90	93	first strand
Strand 8	H	60	64	parallel
Strand 9	H	122	127	first strand
Strand 10	H	90	93	parallel
Strand 11	H	162	166	first strand
Strand 12	H	122	127	parallel
Strand 13	H	208	210	first strand
Strand 14	H	162	166	parallel
Strand 15	H	230	233	first strand
Strand 16	H	7	11	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V0T