Analysis of interatomic Contacts of Structural Units in PDB entry:
2V0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V0Y entry

There are 2 chains in PDB entry 2V0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5VAL 351
A
 GLN 353VAL 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2V0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
60 67Right-handed alpha
Helix 5
5
A
68 70Right-handed 310
Helix 6
6
A
77 92Right-handed alpha
Helix 7
7
A
105 121Right-handed alpha
Helix 8
8
A
124 127Right-handed 310
Helix 9
9
A
136 145Right-handed alpha
Helix 10
10
A
172 184Right-handed alpha
Helix 11
11
A
185 188Right-handed 310
Helix 12
12
A
198 202Right-handed 310
Helix 13
13
A
206 220Right-handed alpha
Helix 14
14
A
230 242Right-handed alpha
Helix 15
15
A
243 246Right-handed 310
Helix 16
16
A
249 258Right-handed alpha
Helix 17
17
A
259 261Right-handed 310
Helix 18
18
A
284 286Right-handed 310
Helix 19
19
A
287 300Right-handed alpha
Helix 20
20
A
311 325Right-handed alpha
Helix 21
21
A
327 348Right-handed alpha
Helix 22
22
A
364 368Right-handed alpha
Helix 23
23
A
372 375Right-handed 310
Helix 24
24
A
376 390Right-handed alpha
Helix 25
25
A
397 402Right-handed alpha
Helix 26
26
A
428 445Right-handed alpha
Helix 27
27
A
446 449Right-handed 310
Helix 28
28
A
461 466Right-handed alpha
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There are 4 sheets in PDB entry 2V0Y. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
391 392parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
263 267anti-parallel
Strand 4
A
224 227parallel
Strand 5
A
191 194parallel
Strand 6
A
129 132parallel
Strand 7
A
149 152parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
394 396anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 456first strand
Strand 2
A
467 470anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il