Analysis of interatomic Contacts of Structural Units in PDB entry:
2V13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V13 entry

There is 1 chain in PDB entry 2V13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2V13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 60Right-handed alpha
Helix 2
2
A
65 69Right-handed 310
Helix 3
3
A
115 120Right-handed alpha
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
142 150Right-handed alpha
Helix 6
6
A
235 247Right-handed alpha
Helix 7
7
A
258 265Right-handed 310
Helix 8
8
A
280 285Right-handed alpha
Helix 9
9
A
316 321Right-handed alpha
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There are 6 sheets in PDB entry 2V13. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 83first strand
Strand 2
A
86 99anti-parallel
Strand 3
A
19 26anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 83first strand
Strand 2
A
86 99anti-parallel
Strand 3
A
102 113anti-parallel
Strand 4
A
44 47parallel
Strand 5
A
126 129anti-parallel
Strand 6
A
31 38parallel
Strand 7
A
19 26anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
202 210anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
313 315parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
202 210anti-parallel
Strand 3
A
268 272anti-parallel
Strand 4
A
275 279anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
300 302parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il