Analysis of interatomic Contacts of Structural Units in PDB entry:
2V1C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V1C entry

There are 3 chains in PDB entry 2V1C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLN 200
B
 LYS 2GLN 200
C
 SER 3VAL 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2V1C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
21 33Right-handed alpha
Helix 3
3
A
36 54Right-handed alpha
Helix 4
4
A
69 74Right-handed alpha
Helix 5
5
A
87 94Right-handed alpha
Helix 6
6
A
124 131Right-handed 310
Helix 7
7
A
144 159Right-handed alpha
Helix 8
8
A
177 181Right-handed 310
Helix 9
9
A
182 192Right-handed alpha
Helix 10
10
B
4 16Right-handed alpha
Helix 11
11
B
21 33Right-handed alpha
Helix 12
12
B
36 54Right-handed alpha
Helix 13
13
B
69 74Right-handed alpha
Helix 14
14
B
87 94Right-handed alpha
Helix 15
15
B
113 116Right-handed 310
Helix 16
16
B
124 131Right-handed 310
Helix 17
17
B
144 159Right-handed alpha
Helix 18
18
B
177 181Right-handed 310
Helix 19
19
B
182 192Right-handed alpha
Helix 20
20
C
80 84Right-handed 310
Helix 21
21
C
85 90Right-handed alpha
Helix 22
22
C
92 103Right-handed alpha
Helix 23
23
C
110 126Right-handed alpha
Helix 24
24
C
128 144Right-handed alpha
Helix 25
25
C
183 193Right-handed alpha
Helix 26
26
C
197 204Right-handed alpha
Helix 27
27
C
207 209Right-handed 310
Helix 28
28
C
210 226Right-handed alpha
Helix 29
29
C
230 236Right-handed 310
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There are 6 sheets in PDB entry 2V1C. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
63 64anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
81 85parallel
Strand 3
A
136 139parallel
Strand 4
A
164 167parallel
Strand 5
B
194 195anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
B
164 167anti-parallel
Strand 3
B
136 139parallel
Strand 4
B
81 85parallel
Strand 5
B
103 106parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
63 64anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 17first strand
Strand 2
C
55 61anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
34 38parallel
Strand 5
C
23 28anti-parallel
Strand 6
C
5 17anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
171 172anti-parallel
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