Analysis of interatomic Contacts of Structural Units in PDB entry:
2V25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V25 entry

There are 2 chains in PDB entry 2V25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 233
B
 GLY 3LEU 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 2V25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
37 52Right-handed alpha
Helix 3
3
A
66 73Right-handed alpha
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
111 113Right-handed 310
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
132 144Right-handed alpha
Helix 8
8
A
155 165Right-handed alpha
Helix 9
9
A
175 179Right-handed alpha
Helix 10
10
A
206 220Right-handed alpha
Helix 11
11
A
220 231Right-handed alpha
Helix 12
12
B
3 12Right-handed alpha
Helix 13
13
B
37 52Right-handed alpha
Helix 14
14
B
66 73Right-handed alpha
Helix 15
15
B
86 91Right-handed alpha
Helix 16
16
B
111 113Right-handed 310
Helix 17
17
B
116 121Right-handed 310
Helix 18
18
B
132 144Right-handed alpha
Helix 19
19
B
155 165Right-handed alpha
Helix 20
20
B
175 179Right-handed alpha
Helix 21
21
B
206 220Right-handed alpha
Helix 22
22
B
220 231Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2V25. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
14 18parallel
Strand 3
A
78 79parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
26 28anti-parallel
Strand 3
A
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
201 203anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
124 128parallel
Strand 3
A
170 174parallel
Strand 4
A
100 109anti-parallel
Strand 5
A
195 198anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
124 128parallel
Strand 3
A
170 174parallel
Strand 4
A
100 109anti-parallel
Strand 5
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
14 18parallel
Strand 3
B
78 79parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
26 28anti-parallel
Strand 3
B
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
201 203anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 153first strand
Strand 2
B
124 128parallel
Strand 3
B
170 174parallel
Strand 4
B
100 109anti-parallel
Strand 5
B
195 198anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 153first strand
Strand 2
B
124 128parallel
Strand 3
B
170 174parallel
Strand 4
B
100 109anti-parallel
Strand 5
B
186 188anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il