Analysis of interatomic Contacts of Structural Units in PDB entry:
2V28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V28 entry

There are 2 chains in PDB entry 2V28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4SER 267
B
 TYR 7SER 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2V28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 32Right-handed alpha
Helix 2
2
A
44 55Right-handed alpha
Helix 3
3
A
63 69Right-handed alpha
Helix 4
4
A
87 97Right-handed alpha
Helix 5
5
A
119 127Right-handed alpha
Helix 6
6
A
128 133Right-handed 310
Helix 7
7
A
135 147Right-handed alpha
Helix 8
8
A
151 165Right-handed alpha
Helix 9
9
A
187 197Right-handed alpha
Helix 10
10
A
206 212Right-handed alpha
Helix 11
11
A
229 236Right-handed 310
Helix 12
12
A
240 245Right-handed alpha
Helix 13
13
A
260 266Right-handed alpha
Helix 14
14
B
21 39Right-handed alpha
Helix 15
15
B
44 55Right-handed alpha
Helix 16
16
B
63 76Right-handed alpha
Helix 17
17
B
87 94Right-handed alpha
Helix 18
18
B
119 127Right-handed alpha
Helix 19
19
B
128 133Right-handed 310
Helix 20
20
B
135 148Right-handed alpha
Helix 21
21
B
151 165Right-handed alpha
Helix 22
22
B
181 186Right-handed alpha
Helix 23
23
B
187 197Right-handed alpha
Helix 24
24
B
206 212Right-handed alpha
Helix 25
25
B
229 231Right-handed 310
Helix 26
26
B
232 239Right-handed alpha
Helix 27
27
B
240 255Right-handed alpha
Helix 28
28
B
260 266Right-handed alpha
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There are 4 sheets in PDB entry 2V28. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
101 103parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
224 227parallel
Strand 4
A
202 204parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
99 103parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
170 173anti-parallel
Strand 3
B
225 227parallel
Strand 4
B
203 204parallel
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