Analysis of interatomic Contacts of Structural Units in PDB entry:
2V2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V2K entry

There are 4 chains in PDB entry 2V2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ASP 41
A
 GLY 43GLU 105
B
 THR 1ASP 41
B
 GLY 43GLN 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2V2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
14 20Right-handed alpha
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
58 60Right-handed 310
Helix 5
5
A
61 65Right-handed 310
Helix 6
6
A
66 74Right-handed alpha
Helix 7
7
A
83 88Right-handed alpha
Helix 8
8
A
94 99Right-handed alpha
Helix 9
9
B
6 9Right-handed 310
Helix 10
10
B
15 19Right-handed 310
Helix 11
11
B
45 49Right-handed 310
Helix 12
12
B
58 60Right-handed 310
Helix 13
13
B
61 65Right-handed 310
Helix 14
14
B
66 74Right-handed alpha
Helix 15
15
B
94 99Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2V2K. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
32 34anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
32 34anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il