Analysis of interatomic Contacts of Structural Units in PDB entry:
2V2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V2U entry

There are 2 chains in PDB entry 2V2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1TYR 173
B
 GLY 1TYR 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2V2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 69Right-handed 310
Helix 2
2
A
95 97Right-handed 310
Helix 3
3
A
110 115Right-handed alpha
Helix 4
4
A
152 156Right-handed 310
Helix 5
5
B
8 12Right-handed 310
Helix 6
6
B
24 28Right-handed 310
Helix 7
7
B
48 50Right-handed 310
Helix 8
8
B
64 69Right-handed 310
Helix 9
9
B
110 116Right-handed alpha
Helix 10
10
B
136 138Right-handed 310
Helix 11
11
B
152 157Right-handed 310
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There are 8 sheets in PDB entry 2V2U. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
2 8anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
60 62anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
77 81anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 104first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
148 150anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
165 168anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
34 37anti-parallel
Strand 4
B
60 62anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
41 47anti-parallel
Strand 3
B
77 81anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 104first strand
Strand 2
B
88 94anti-parallel
Strand 3
B
122 127anti-parallel
Strand 4
B
149 150anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 145first strand
Strand 2
B
130 135anti-parallel
Strand 3
B
165 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il