Analysis of interatomic Contacts of Structural Units in PDB entry:
2V3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V3M entry

There are 6 chains in PDB entry 2V3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 122THR 220
B
 VAL 122THR 220
C
 GLU 120THR 220
D
 GLU 120THR 220
E
 GLU 120THR 220
F
 GLU 124THR 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2V3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
198 200Right-handed 310
Helix 2
2
A
201 210Right-handed alpha
Helix 3
3
B
198 200Right-handed 310
Helix 4
4
B
201 210Right-handed alpha
Helix 5
5
C
198 200Right-handed 310
Helix 6
6
C
201 210Right-handed alpha
Helix 7
7
D
198 200Right-handed 310
Helix 8
8
D
201 210Right-handed alpha
Helix 9
9
E
198 200Right-handed 310
Helix 10
10
E
201 210Right-handed alpha
Helix 11
11
F
198 200Right-handed 310
Helix 12
12
F
201 210Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2V3M. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
215 219anti-parallel
Strand 4
A
137 147anti-parallel
Strand 5
A
150 155anti-parallel
Strand 6
A
192 196anti-parallel
Strand 7
A
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
215 218anti-parallel
Strand 4
B
139 147anti-parallel
Strand 5
B
150 154anti-parallel
Strand 6
B
192 196anti-parallel
Strand 7
B
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 180first strand
Strand 2
C
169 171anti-parallel
Strand 3
C
215 219anti-parallel
Strand 4
C
137 147anti-parallel
Strand 5
C
150 154anti-parallel
Strand 6
C
192 196anti-parallel
Strand 7
C
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 180first strand
Strand 2
D
169 172anti-parallel
Strand 3
D
215 219anti-parallel
Strand 4
D
137 147anti-parallel
Strand 5
D
150 154anti-parallel
Strand 6
D
192 196anti-parallel
Strand 7
D
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
177 180first strand
Strand 2
E
169 172anti-parallel
Strand 3
E
215 219anti-parallel
Strand 4
E
137 147anti-parallel
Strand 5
E
150 154anti-parallel
Strand 6
E
192 196anti-parallel
Strand 7
E
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
177 180first strand
Strand 2
F
169 172anti-parallel
Strand 3
F
215 219anti-parallel
Strand 4
F
137 147anti-parallel
Strand 5
F
150 155anti-parallel
Strand 6
F
192 196anti-parallel
Strand 7
F
183 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il