Analysis of interatomic Contacts of Structural Units in PDB entry:
2V3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V3S entry

There are 4 chains in PDB entry 2V3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 432SER 527
B
 GLY 432SER 527
C
 GLY 1003THR 1008
D
 GLY 1003VAL 1007
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 2V3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
460 471Right-handed alpha
Helix 2
2
A
475 477Right-handed 310
Helix 3
3
A
478 492Right-handed alpha
Helix 4
4
A
504 507Right-handed 310
Helix 5
5
A
515 518Right-handed 310
Helix 6
6
B
460 471Right-handed alpha
Helix 7
7
B
475 477Right-handed 310
Helix 8
8
B
478 492Right-handed alpha
Helix 9
9
B
504 508Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2V3S. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 454first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
521 526anti-parallel
Strand 4
A
498 502anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
498 502first strand
Strand 2
B
521 526anti-parallel
Strand 3
B
434 441anti-parallel
Strand 4
B
447 454anti-parallel
Strand 5
C
1006 1007anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il