Analysis of interatomic Contacts of Structural Units in PDB entry:
2V40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V40 entry

There is 1 chain in PDB entry 2V40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26PHE 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2V40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 52Right-handed alpha
Helix 2
2
A
83 88Right-handed 310
Helix 3
3
A
103 116Right-handed alpha
Helix 4
4
A
118 121Right-handed 310
Helix 5
5
A
123 125Right-handed 310
Helix 6
6
A
137 150Right-handed alpha
Helix 7
7
A
165 175Right-handed alpha
Helix 8
8
A
180 185Right-handed alpha
Helix 9
9
A
187 206Right-handed alpha
Helix 10
10
A
212 228Right-handed alpha
Helix 11
11
A
233 244Right-handed alpha
Helix 12
12
A
256 260Right-handed 310
Helix 13
13
A
276 284Right-handed alpha
Helix 14
14
A
286 288Right-handed 310
Helix 15
15
A
315 325Right-handed alpha
Helix 16
16
A
343 354Right-handed alpha
Helix 17
17
A
362 369Right-handed 310
Helix 18
18
A
391 396Right-handed alpha
Helix 19
19
A
417 421Right-handed 310
Helix 20
20
A
422 437Right-handed alpha
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There are 6 sheets in PDB entry 2V40. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
127 130parallel
Strand 3
A
92 95parallel
Strand 4
A
56 59parallel
Strand 5
A
249 252parallel
Strand 6
A
30 35parallel
Strand 7
A
290 298parallel
Strand 8
A
357 361parallel
Strand 9
A
440 444parallel
Strand 10
A
452 454anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
75 79anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
134 136parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
337 339anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
371 380parallel
Strand 3
A
399 406anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
371 380parallel
Strand 3
A
383 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il