Analysis of interatomic Contacts of Structural Units in PDB entry:
2V41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V41 entry

There are 8 chains in PDB entry 2V41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 221
B
 GLY 2SER 221
C
 GLY 2PRO 217
D
 GLY 2SER 221
E
 GLY 2SER 221
F
 GLY 2SER 221
G
 GLY 2SER 221
H
 GLY 2SER 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 2V41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
42 62Right-handed alpha
Helix 3
3
A
73 89Right-handed alpha
Helix 4
4
A
104 110Right-handed alpha
Helix 5
5
A
152 169Right-handed alpha
Helix 6
6
A
190 198Right-handed alpha
Helix 7
7
B
23 28Right-handed alpha
Helix 8
8
B
42 62Right-handed alpha
Helix 9
10
B
73 89Right-handed alpha
Helix 10
11
B
104 110Right-handed alpha
Helix 11
12
B
152 167Right-handed alpha
Helix 12
13
B
193 198Right-handed alpha
Helix 13
14
C
23 28Right-handed alpha
Helix 14
15
C
42 62Right-handed alpha
Helix 15
17
C
73 89Right-handed alpha
Helix 16
18
C
104 110Right-handed alpha
Helix 17
19
C
152 169Right-handed alpha
Helix 18
20
C
190 198Right-handed alpha
Helix 19
21
D
23 28Right-handed alpha
Helix 20
22
D
42 62Right-handed alpha
Helix 21
24
D
73 89Right-handed alpha
Helix 22
25
D
104 110Right-handed alpha
Helix 23
26
D
152 167Right-handed alpha
Helix 24
27
D
193 198Right-handed alpha
Helix 25
28
E
23 28Right-handed alpha
Helix 26
29
E
42 61Right-handed alpha
Helix 27
30
E
73 89Right-handed alpha
Helix 28
31
E
104 110Right-handed alpha
Helix 29
32
E
152 169Right-handed alpha
Helix 30
33
E
190 198Right-handed alpha
Helix 31
34
F
23 28Right-handed alpha
Helix 32
35
F
42 62Right-handed alpha
Helix 33
37
F
73 89Right-handed alpha
Helix 34
38
F
104 110Right-handed alpha
Helix 35
39
F
152 169Right-handed alpha
Helix 36
40
F
190 198Right-handed alpha
Helix 37
41
G
23 28Right-handed alpha
Helix 38
42
G
42 62Right-handed alpha
Helix 39
44
G
73 89Right-handed alpha
Helix 40
45
G
104 110Right-handed alpha
Helix 41
46
G
152 169Right-handed alpha
Helix 42
47
G
190 198Right-handed alpha
Helix 43
48
H
23 28Right-handed alpha
Helix 44
49
H
42 62Right-handed alpha
Helix 45
51
H
73 89Right-handed alpha
Helix 46
52
H
104 110Right-handed alpha
Helix 47
53
H
152 169Right-handed alpha
Helix 48
54
H
192 198Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 2V41. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, CD, A, DB, EA, EB, EC, FA, GA, GB, GC, HA, HB, HC,

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
98 100anti-parallel
Strand 4
A
64 70parallel
Strand 5
A
31 36parallel
Strand 6
A
128 133anti-parallel
Strand 7
A
139 145anti-parallel
Strand 8
B
139 145anti-parallel
Strand 9
B
128 133anti-parallel
Strand 10
B
31 36anti-parallel
Strand 11
B
64 70parallel
Strand 12
B
98 100parallel
Strand 13
B
13 16anti-parallel
Strand 14
B
21 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
183 185anti-parallel
Strand 3
A
214 216anti-parallel
Strand 4
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
183 185anti-parallel
Strand 3
B
214 216anti-parallel
Strand 4
B
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 22first strand
Strand 2
C
13 16anti-parallel
Strand 3
C
98 100anti-parallel
Strand 4
C
64 70parallel
Strand 5
C
31 36parallel
Strand 6
C
128 133anti-parallel
Strand 7
C
139 145anti-parallel
Strand 8
D
139 145anti-parallel
Strand 9
D
128 133anti-parallel
Strand 10
D
31 36anti-parallel
Strand 11
D
64 70parallel
Strand 12
D
98 100parallel
Strand 13
D
13 16anti-parallel
Strand 14
D
21 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 118first strand
Strand 2
C
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 172first strand
Strand 2
C
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 118first strand
Strand 2
D
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 172first strand
Strand 2
D
183 185anti-parallel
Strand 3
D
214 216anti-parallel
Strand 4
D
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 22first strand
Strand 2
E
13 16anti-parallel
Strand 3
E
98 100anti-parallel
Strand 4
E
64 70parallel
Strand 5
E
31 36parallel
Strand 6
E
128 133anti-parallel
Strand 7
E
139 145anti-parallel
Strand 8
F
139 145anti-parallel
Strand 9
F
128 133anti-parallel
Strand 10
F
31 35anti-parallel
Strand 11
F
64 70parallel
Strand 12
F
98 100parallel
Strand 13
F
13 16anti-parallel
Strand 14
F
19 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 118first strand
Strand 2
E
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 172first strand
Strand 2
E
183 185anti-parallel
Strand 3
E
214 216anti-parallel
Strand 4
E
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
171 172first strand
Strand 2
F
183 185anti-parallel
Strand 3
F
214 216anti-parallel
Strand 4
F
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
21 22first strand
Strand 2
G
13 16anti-parallel
Strand 3
G
98 100anti-parallel
Strand 4
G
64 70parallel
Strand 5
G
31 36parallel
Strand 6
G
128 133anti-parallel
Strand 7
G
139 145anti-parallel
Strand 8
H
139 145anti-parallel
Strand 9
H
128 133anti-parallel
Strand 10
H
31 36anti-parallel
Strand 11
H
64 70parallel
Strand 12
H
98 100parallel
Back to list of sheets
Back to top of page

There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
113 118first strand
Strand 2
G
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
171 172first strand
Strand 2
G
183 185anti-parallel
Strand 3
G
214 216anti-parallel
Strand 4
G
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 14first strand
Strand 2
H
21 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
113 118first strand
Strand 2
H
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
171 172first strand
Strand 2
H
183 185anti-parallel
Strand 3
H
214 216anti-parallel
Strand 4
H
202 203anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il