Analysis of interatomic Contacts of Structural Units in PDB entry:
2V4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V4J entry

There are 6 chains in PDB entry 2V4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 437
B
 ALA 2PHE 381
C
 GLU 3VAL 105
D
 ALA 2ARG 437
E
 ALA 2PHE 381
F
 GLU 3VAL 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 2V4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed 310
Helix 2
2
A
19 34Right-handed alpha
Helix 3
3
A
45 61Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
112 126Right-handed alpha
Helix 6
6
A
145 147Right-handed 310
Helix 7
7
A
148 159Right-handed alpha
Helix 8
8
A
178 182Right-handed 310
Helix 9
9
A
189 201Right-handed alpha
Helix 10
10
A
201 207Right-handed alpha
Helix 11
11
A
227 232Right-handed alpha
Helix 12
12
A
247 256Right-handed alpha
Helix 13
13
A
260 265Right-handed 310
Helix 14
14
A
275 280Right-handed alpha
Helix 15
15
A
281 284Right-handed 310
Helix 16
16
A
300 303Right-handed 310
Helix 17
17
A
307 313Right-handed alpha
Helix 18
18
A
355 373Right-handed alpha
Helix 19
19
A
378 387Right-handed alpha
Helix 20
20
A
387 395Right-handed alpha
Helix 21
21
A
400 403Right-handed 310
Helix 22
22
A
416 420Right-handed 310
Helix 23
23
A
427 435Right-handed alpha
Helix 24
24
B
31 38Right-handed alpha
Helix 25
25
B
75 89Right-handed alpha
Helix 26
26
B
107 121Right-handed alpha
Helix 27
27
B
146 150Right-handed 310
Helix 28
28
B
158 174Right-handed alpha
Helix 29
29
B
195 199Right-handed 310
Helix 30
30
B
214 222Right-handed alpha
Helix 31
31
B
223 230Right-handed alpha
Helix 32
32
B
255 258Right-handed 310
Helix 33
33
B
262 268Right-handed alpha
Helix 34
34
B
313 331Right-handed alpha
Helix 35
35
B
336 345Right-handed alpha
Helix 36
36
B
345 354Right-handed alpha
Helix 37
37
B
358 362Right-handed 310
Helix 38
38
B
366 372Right-handed 310
Helix 39
39
C
21 25Right-handed 310
Helix 40
40
C
26 34Right-handed alpha
Helix 41
41
C
35 38Right-handed 310
Helix 42
42
C
43 61Right-handed alpha
Helix 43
43
C
65 74Right-handed alpha
Helix 44
44
C
76 84Right-handed alpha
Helix 45
45
C
86 91Right-handed alpha
Helix 46
46
C
91 97Right-handed alpha
Helix 47
47
D
8 14Right-handed 310
Helix 48
48
D
19 34Right-handed alpha
Helix 49
49
D
45 61Right-handed alpha
Helix 50
50
D
91 95Right-handed 310
Helix 51
51
D
112 126Right-handed alpha
Helix 52
52
D
145 147Right-handed 310
Helix 53
53
D
148 159Right-handed alpha
Helix 54
54
D
178 182Right-handed 310
Helix 55
55
D
189 201Right-handed alpha
Helix 56
56
D
201 207Right-handed alpha
Helix 57
57
D
227 232Right-handed alpha
Helix 58
58
D
247 256Right-handed alpha
Helix 59
59
D
260 265Right-handed 310
Helix 60
60
D
275 280Right-handed alpha
Helix 61
61
D
281 284Right-handed 310
Helix 62
62
D
300 303Right-handed 310
Helix 63
63
D
307 313Right-handed alpha
Helix 64
64
D
355 373Right-handed alpha
Helix 65
65
D
378 387Right-handed alpha
Helix 66
66
D
387 395Right-handed alpha
Helix 67
67
D
400 403Right-handed 310
Helix 68
68
D
416 420Right-handed 310
Helix 69
69
D
427 435Right-handed alpha
Helix 70
70
E
31 38Right-handed alpha
Helix 71
71
E
75 89Right-handed alpha
Helix 72
72
E
107 121Right-handed alpha
Helix 73
73
E
146 150Right-handed 310
Helix 74
74
E
158 174Right-handed alpha
Helix 75
75
E
195 199Right-handed 310
Helix 76
76
E
214 222Right-handed alpha
Helix 77
77
E
223 230Right-handed alpha
Helix 78
78
E
255 258Right-handed 310
Helix 79
79
E
262 268Right-handed alpha
Helix 80
80
E
313 331Right-handed alpha
Helix 81
81
E
336 345Right-handed alpha
Helix 82
82
E
345 354Right-handed alpha
Helix 83
83
E
358 362Right-handed 310
Helix 84
84
E
366 372Right-handed 310
Helix 85
85
F
21 25Right-handed 310
Helix 86
86
F
26 34Right-handed alpha
Helix 87
87
F
35 38Right-handed 310
Helix 88
88
F
43 61Right-handed alpha
Helix 89
89
F
65 74Right-handed alpha
Helix 90
90
F
76 84Right-handed alpha
Helix 91
91
F
86 91Right-handed alpha
Helix 92
92
F
91 97Right-handed alpha
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There are 16 sheets in PDB entry 2V4J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, CA, A, DB, C, DD, DE, EA, EB, FA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
139 142anti-parallel
Strand 4
A
129 131anti-parallel
Strand 5
B
72 74anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
B
92 95anti-parallel
Strand 3
B
101 105anti-parallel
Strand 4
B
61 67anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
41 48anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
216 219parallel
Strand 3
A
234 240parallel
Strand 4
A
323 329anti-parallel
Strand 5
A
343 349anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
317 318anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
296 298anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
201 206parallel
Strand 3
B
280 285anti-parallel
Strand 4
B
300 307anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 243first strand
Strand 2
B
246 253anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
9 11anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 81first strand
Strand 2
D
99 102anti-parallel
Strand 3
D
139 142anti-parallel
Strand 4
D
129 131anti-parallel
Strand 5
E
72 74anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 111first strand
Strand 2
E
92 95anti-parallel
Strand 3
E
101 105anti-parallel
Strand 4
E
61 67anti-parallel
Strand 5
E
51 56anti-parallel
Strand 6
E
41 48anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 176first strand
Strand 2
D
216 219parallel
Strand 3
D
234 240parallel
Strand 4
D
323 329anti-parallel
Strand 5
D
343 349anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
245 246first strand
Strand 2
D
317 318anti-parallel
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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 291first strand
Strand 2
D
296 298anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
184 187first strand
Strand 2
E
201 206parallel
Strand 3
E
280 285anti-parallel
Strand 4
E
300 307anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
236 243first strand
Strand 2
E
246 253anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 6first strand
Strand 2
F
9 11anti-parallel
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