Analysis of interatomic Contacts of Structural Units in PDB entry:
2V4M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V4M entry

There are 4 chains in PDB entry 2V4M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 336ASP 687
B
 GLY 337ASP 687
C
 PHE 339ARG 690
D
 ASN 338ASP 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 2V4M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
341 349Right-handed alpha
Helix 2
2
A
349 359Right-handed alpha
Helix 3
3
A
371 375Right-handed 310
Helix 4
4
A
377 383Right-handed alpha
Helix 5
5
A
392 401Right-handed alpha
Helix 6
6
A
402 411Right-handed alpha
Helix 7
7
A
419 425Right-handed alpha
Helix 8
8
A
444 457Right-handed alpha
Helix 9
9
A
470 476Right-handed alpha
Helix 10
10
A
493 511Right-handed alpha
Helix 11
11
A
517 540Right-handed alpha
Helix 12
12
A
541 553Right-handed alpha
Helix 13
13
A
563 565Right-handed 310
Helix 14
14
A
566 582Right-handed alpha
Helix 15
15
A
591 601Right-handed 310
Helix 16
16
A
616 629Right-handed alpha
Helix 17
17
A
642 648Right-handed alpha
Helix 18
18
A
662 683Right-handed alpha
Helix 19
19
B
341 349Right-handed alpha
Helix 20
20
B
349 358Right-handed alpha
Helix 21
21
B
371 375Right-handed 310
Helix 22
22
B
377 383Right-handed alpha
Helix 23
23
B
392 411Right-handed alpha
Helix 24
24
B
419 426Right-handed alpha
Helix 25
25
B
444 457Right-handed alpha
Helix 26
26
B
470 476Right-handed alpha
Helix 27
27
B
493 511Right-handed alpha
Helix 28
28
B
517 540Right-handed alpha
Helix 29
29
B
541 552Right-handed alpha
Helix 30
30
B
566 580Right-handed alpha
Helix 31
31
B
591 601Right-handed 310
Helix 32
32
B
616 629Right-handed alpha
Helix 33
33
B
642 647Right-handed alpha
Helix 34
34
B
662 682Right-handed alpha
Helix 35
35
C
341 349Right-handed alpha
Helix 36
36
C
349 359Right-handed alpha
Helix 37
37
C
371 375Right-handed 310
Helix 38
38
C
377 383Right-handed alpha
Helix 39
39
C
392 411Right-handed alpha
Helix 40
40
C
419 425Right-handed alpha
Helix 41
41
C
444 457Right-handed alpha
Helix 42
42
C
470 476Right-handed alpha
Helix 43
43
C
493 511Right-handed alpha
Helix 44
44
C
517 540Right-handed alpha
Helix 45
45
C
541 553Right-handed alpha
Helix 46
46
C
563 565Right-handed 310
Helix 47
47
C
566 582Right-handed alpha
Helix 48
48
C
591 601Right-handed 310
Helix 49
49
C
616 630Right-handed alpha
Helix 50
50
C
642 649Right-handed alpha
Helix 51
51
C
662 682Right-handed alpha
Helix 52
52
D
341 349Right-handed alpha
Helix 53
53
D
349 359Right-handed alpha
Helix 54
54
D
371 375Right-handed 310
Helix 55
55
D
377 382Right-handed alpha
Helix 56
56
D
392 411Right-handed alpha
Helix 57
57
D
419 425Right-handed alpha
Helix 58
58
D
444 457Right-handed alpha
Helix 59
59
D
470 476Right-handed alpha
Helix 60
60
D
493 511Right-handed alpha
Helix 61
61
D
517 540Right-handed alpha
Helix 62
62
D
541 551Right-handed alpha
Helix 63
63
D
563 565Right-handed 310
Helix 64
64
D
566 582Right-handed alpha
Helix 65
65
D
591 601Right-handed 310
Helix 66
66
D
616 630Right-handed alpha
Helix 67
67
D
642 649Right-handed alpha
Helix 68
68
D
662 682Right-handed alpha
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There are 12 sheets in PDB entry 2V4M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
368 369anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 418first strand
Strand 2
A
386 391parallel
Strand 3
A
433 439parallel
Strand 4
A
460 465parallel
Strand 5
A
478 481parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 589first strand
Strand 2
A
557 562parallel
Strand 3
A
607 611parallel
Strand 4
A
635 639parallel
Strand 5
A
652 655parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
368 369anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 418first strand
Strand 2
B
386 391parallel
Strand 3
B
433 439parallel
Strand 4
B
460 465parallel
Strand 5
B
478 481parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
584 589first strand
Strand 2
B
557 562parallel
Strand 3
B
607 611parallel
Strand 4
B
634 639parallel
Strand 5
B
652 655parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
368 369anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
414 418first strand
Strand 2
C
386 391parallel
Strand 3
C
433 439parallel
Strand 4
C
460 465parallel
Strand 5
C
478 481parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
584 589first strand
Strand 2
C
557 562parallel
Strand 3
C
607 611parallel
Strand 4
C
635 639parallel
Strand 5
C
652 655parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
362 363first strand
Strand 2
D
368 369anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
414 418first strand
Strand 2
D
386 391parallel
Strand 3
D
433 439parallel
Strand 4
D
460 465parallel
Strand 5
D
478 481parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
584 589first strand
Strand 2
D
557 562parallel
Strand 3
D
607 611parallel
Strand 4
D
635 639parallel
Strand 5
D
652 655parallel
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