Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V5B entry

There are 2 chains in PDB entry 2V5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 117
A
 ALA 119LYS 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2V5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 32Right-handed alpha
Helix 2
2
A
48 56Right-handed alpha
Helix 3
3
A
77 87Right-handed alpha
Helix 4
4
A
96 103Right-handed alpha
Helix 5
5
A
106 117Right-handed alpha
Helix 6
6
A
131 137Right-handed alpha
Helix 7
7
A
139 153Right-handed alpha
Helix 8
8
A
157 161Right-handed 310
Helix 9
9
A
169 174Right-handed alpha
Helix 10
10
A
180 200Right-handed alpha
Helix 11
11
A
200 207Right-handed alpha
Helix 12
12
A
216 225Right-handed alpha
Helix 13
13
A
235 239Right-handed 310
Helix 14
14
A
242 249Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2V5B.

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
39 44parallel
Strand 3
A
61 65parallel
Strand 4
A
91 94parallel
Strand 5
A
123 128parallel
Strand 6
A
163 167parallel
Strand 7
A
208 211parallel
Strand 8
A
231 234parallel
Strand 9
A
8 13parallel
Strand 10
A
8 13first strand
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