Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V5H entry

There are 12 chains in PDB entry 2V5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	SER 291
B	ALA 8	ALA 296
C	ALA 8	SER 291
D	ALA 8	TYR 293
E	ALA 8	TYR 293
F	ILE 6	GLY 292
G	MET 1	ALA 111
H	MET 1	ASN 108
I	MET 1	ALA 111
J	MET 1	ASP 110
K	MET 1	ASN 108
L	MET 1	ALA 109

There are 72 helices in PDB entry 2V5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	19	Right-handed alpha
Helix 2	2	A	20	27	Right-handed alpha
Helix 3	3	A	43	61	Right-handed alpha
Helix 4	4	A	70	81	Right-handed alpha
Helix 5	5	A	95	122	Right-handed alpha
Helix 6	6	A	157	167	Right-handed alpha
Helix 7	7	A	187	199	Right-handed alpha
Helix 8	8	A	229	239	Right-handed alpha
Helix 9	9	A	245	257	Right-handed alpha
Helix 10	10	A	272	279	Right-handed alpha
Helix 11	11	B	12	19	Right-handed alpha
Helix 12	12	B	20	27	Right-handed alpha
Helix 13	13	B	43	61	Right-handed alpha
Helix 14	14	B	70	81	Right-handed alpha
Helix 15	15	B	95	122	Right-handed alpha
Helix 16	16	B	157	167	Right-handed alpha
Helix 17	17	B	187	199	Right-handed alpha
Helix 18	18	B	229	239	Right-handed alpha
Helix 19	19	B	245	257	Right-handed alpha
Helix 20	20	B	272	279	Right-handed alpha
Helix 21	21	C	13	19	Right-handed alpha
Helix 22	22	C	20	27	Right-handed alpha
Helix 23	23	C	43	61	Right-handed alpha
Helix 24	24	C	70	81	Right-handed alpha
Helix 25	25	C	95	122	Right-handed alpha
Helix 26	26	C	157	167	Right-handed alpha
Helix 27	27	C	187	199	Right-handed alpha
Helix 28	28	C	229	239	Right-handed alpha
Helix 29	29	C	245	257	Right-handed alpha
Helix 30	30	C	272	279	Right-handed alpha
Helix 31	31	D	13	19	Right-handed alpha
Helix 32	32	D	20	27	Right-handed alpha
Helix 33	33	D	43	61	Right-handed alpha
Helix 34	34	D	70	81	Right-handed alpha
Helix 35	35	D	95	122	Right-handed alpha
Helix 36	36	D	157	167	Right-handed alpha
Helix 37	37	D	187	199	Right-handed alpha
Helix 38	38	D	229	239	Right-handed alpha
Helix 39	39	D	245	257	Right-handed alpha
Helix 40	40	D	272	279	Right-handed alpha
Helix 41	41	E	12	19	Right-handed alpha
Helix 42	42	E	20	27	Right-handed alpha
Helix 43	43	E	43	61	Right-handed alpha
Helix 44	44	E	70	81	Right-handed alpha
Helix 45	45	E	95	122	Right-handed alpha
Helix 46	46	E	157	167	Right-handed alpha
Helix 47	47	E	187	199	Right-handed alpha
Helix 48	48	E	229	239	Right-handed alpha
Helix 49	49	E	245	257	Right-handed alpha
Helix 50	50	E	272	279	Right-handed alpha
Helix 51	51	F	13	19	Right-handed alpha
Helix 52	52	F	20	27	Right-handed alpha
Helix 53	53	F	43	61	Right-handed alpha
Helix 54	54	F	70	81	Right-handed alpha
Helix 55	55	F	95	122	Right-handed alpha
Helix 56	56	F	157	167	Right-handed alpha
Helix 57	57	F	187	199	Right-handed alpha
Helix 58	58	F	229	239	Right-handed alpha
Helix 59	59	F	245	257	Right-handed alpha
Helix 60	60	F	272	279	Right-handed alpha
Helix 61	61	G	12	23	Right-handed alpha
Helix 62	62	G	69	82	Right-handed alpha
Helix 63	63	H	12	23	Right-handed alpha
Helix 64	64	H	69	82	Right-handed alpha
Helix 65	65	I	12	23	Right-handed alpha
Helix 66	66	I	69	82	Right-handed alpha
Helix 67	67	J	12	23	Right-handed alpha
Helix 68	68	J	69	82	Right-handed alpha
Helix 69	69	K	12	23	Right-handed alpha
Helix 70	70	K	69	82	Right-handed alpha
Helix 71	71	L	12	23	Right-handed alpha
Helix 72	72	L	69	82	Right-handed alpha

There are 32 sheets in PDB entry 2V5H. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, HA, IA, JA, JB, KA, LA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	169	174	parallel
Strand 3	A	63	68	parallel
Strand 4	A	30	36	parallel
Strand 5	A	201	208	parallel
Strand 6	A	261	268	parallel
Strand 7	A	284	289	anti-parallel
Strand 8	A	226	228	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	91	93	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	148	156	anti-parallel
Strand 3	A	182	186	parallel
Strand 4	A	176	178	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	222	224	anti-parallel

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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	169	174	parallel
Strand 3	B	63	68	parallel
Strand 4	B	30	36	parallel
Strand 5	B	201	208	parallel
Strand 6	B	261	268	parallel
Strand 7	B	284	289	anti-parallel
Strand 8	B	226	228	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	91	93	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	148	156	anti-parallel
Strand 3	B	182	186	parallel
Strand 4	B	176	178	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	222	224	anti-parallel

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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	169	174	parallel
Strand 3	C	63	68	parallel
Strand 4	C	30	36	parallel
Strand 5	C	201	208	parallel
Strand 6	C	261	268	parallel
Strand 7	C	284	289	anti-parallel
Strand 8	C	226	228	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	91	93	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	148	156	anti-parallel
Strand 3	C	182	186	parallel
Strand 4	C	176	178	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	215	first strand
Strand 2	C	222	224	anti-parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	169	174	parallel
Strand 3	D	63	68	parallel
Strand 4	D	30	36	parallel
Strand 5	D	201	208	parallel
Strand 6	D	261	268	parallel
Strand 7	D	284	289	anti-parallel
Strand 8	D	226	228	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	91	93	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	148	156	anti-parallel
Strand 3	D	182	186	parallel
Strand 4	D	176	178	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	222	224	anti-parallel

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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	128	first strand
Strand 2	E	169	174	parallel
Strand 3	E	63	68	parallel
Strand 4	E	30	36	parallel
Strand 5	E	201	208	parallel
Strand 6	E	261	268	parallel
Strand 7	E	284	289	anti-parallel
Strand 8	E	226	228	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	91	93	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	148	156	anti-parallel
Strand 3	E	182	186	parallel
Strand 4	E	176	178	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	215	first strand
Strand 2	E	222	224	anti-parallel

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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	128	first strand
Strand 2	F	169	174	parallel
Strand 3	F	63	68	parallel
Strand 4	F	30	36	parallel
Strand 5	F	201	208	parallel
Strand 6	F	261	268	parallel
Strand 7	F	284	289	anti-parallel
Strand 8	F	226	228	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	88	first strand
Strand 2	F	91	93	anti-parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	139	first strand
Strand 2	F	148	156	anti-parallel
Strand 3	F	182	186	parallel
Strand 4	F	176	178	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	215	first strand
Strand 2	F	222	224	anti-parallel

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There are 25 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	108	first strand
Strand 2	G	97	102	anti-parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	2	8	anti-parallel
Strand 5	H	56	65	anti-parallel
Strand 6	H	28	36	anti-parallel
Strand 7	G	28	36	anti-parallel
Strand 8	I	28	36	anti-parallel
Strand 9	I	56	65	anti-parallel
Strand 10	I	2	8	anti-parallel
Strand 11	I	89	94	anti-parallel
Strand 12	H	97	102	anti-parallel
Strand 13	H	105	108	anti-parallel
Strand 14	H	97	102	anti-parallel
Strand 15	I	89	94	anti-parallel
Strand 16	I	2	8	anti-parallel
Strand 17	I	56	65	anti-parallel
Strand 18	I	28	36	anti-parallel
Strand 19	H	28	36	parallel
Strand 20	G	28	36	anti-parallel
Strand 21	G	56	65	anti-parallel
Strand 22	G	2	8	anti-parallel
Strand 23	G	89	94	anti-parallel
Strand 24	I	97	102	anti-parallel
Strand 25	I	105	108	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	46	first strand
Strand 2	G	49	51	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	46	first strand
Strand 2	H	49	51	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	46	first strand
Strand 2	I	49	51	anti-parallel

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There are 25 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	105	108	first strand
Strand 2	J	97	102	anti-parallel
Strand 3	K	89	94	anti-parallel
Strand 4	K	2	8	anti-parallel
Strand 5	K	56	65	anti-parallel
Strand 6	K	28	36	anti-parallel
Strand 7	J	28	36	anti-parallel
Strand 8	L	28	36	anti-parallel
Strand 9	L	56	65	anti-parallel
Strand 10	L	2	8	anti-parallel
Strand 11	L	89	94	anti-parallel
Strand 12	K	97	102	anti-parallel
Strand 13	K	105	108	anti-parallel
Strand 14	K	97	102	anti-parallel
Strand 15	L	89	94	anti-parallel
Strand 16	L	2	8	anti-parallel
Strand 17	L	56	65	anti-parallel
Strand 18	L	28	36	anti-parallel
Strand 19	K	28	36	parallel
Strand 20	J	28	36	anti-parallel
Strand 21	J	56	65	anti-parallel
Strand 22	J	2	8	anti-parallel
Strand 23	J	89	94	anti-parallel
Strand 24	L	97	102	anti-parallel
Strand 25	L	105	108	anti-parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	46	first strand
Strand 2	J	49	51	anti-parallel

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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	46	first strand
Strand 2	K	49	51	anti-parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	46	first strand
Strand 2	L	49	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5H