Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V5P entry

There are 4 chains in PDB entry 2V5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1516	LYS 1990
B	CYS 1516	LYS 1990
C	GLU 6	PRO 63
D	GLU 6	PRO 63

There are 20 helices in PDB entry 2V5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1530	1533	Right-handed 310
Helix 2	2	A	1643	1646	Right-handed 310
Helix 3	3	A	1664	1666	Right-handed 310
Helix 4	4	A	1792	1795	Right-handed 310
Helix 5	5	A	1819	1822	Right-handed 310
Helix 6	6	A	1932	1937	Right-handed alpha
Helix 7	7	A	1985	1987	Right-handed 310
Helix 8	8	B	1530	1533	Right-handed 310
Helix 9	9	B	1643	1646	Right-handed 310
Helix 10	10	B	1664	1666	Right-handed 310
Helix 11	11	B	1792	1795	Right-handed 310
Helix 12	12	B	1819	1822	Right-handed 310
Helix 13	13	B	1932	1937	Right-handed alpha
Helix 14	14	B	1985	1987	Right-handed 310
Helix 15	15	C	10	21	Right-handed alpha
Helix 16	16	C	41	47	Right-handed alpha
Helix 17	17	C	52	58	Right-handed alpha
Helix 18	18	D	10	21	Right-handed alpha
Helix 19	19	D	41	47	Right-handed alpha
Helix 20	20	D	53	58	Right-handed alpha

There are 24 sheets in PDB entry 2V5P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, CA, A,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1517	1519	first strand
Strand 2	A	1526	1528	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1538	1542	first strand
Strand 2	A	1546	1550	anti-parallel
Strand 3	A	1563	1567	anti-parallel
Strand 4	A	1572	1576	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1581	1584	first strand
Strand 2	A	1587	1592	anti-parallel
Strand 3	A	1607	1614	anti-parallel
Strand 4	A	1635	1642	parallel
Strand 5	A	1624	1630	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1653	1656	first strand
Strand 2	A	1659	1662	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1673	1675	first strand
Strand 2	A	1690	1692	anti-parallel
Strand 3	A	1712	1714	anti-parallel
Strand 4	A	1722	1725	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1732	1734	first strand
Strand 2	A	1739	1744	anti-parallel
Strand 3	A	1760	1766	anti-parallel
Strand 4	A	1785	1791	parallel
Strand 5	A	1775	1779	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1804	1808	first strand
Strand 2	A	1813	1817	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1824	1829	first strand
Strand 2	A	1832	1837	anti-parallel
Strand 3	A	1855	1858	anti-parallel
Strand 4	A	1863	1865	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1868	1877	first strand
Strand 2	A	1882	1888	anti-parallel
Strand 3	A	1950	1957	anti-parallel
Strand 4	A	1976	1983	parallel
Strand 5	A	1967	1972	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1896	1898	first strand
Strand 2	A	1939	1943	anti-parallel
Strand 3	A	1925	1929	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1907	1909	first strand
Strand 2	A	1912	1914	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1517	1519	first strand
Strand 2	B	1526	1528	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1538	1542	first strand
Strand 2	B	1546	1550	anti-parallel
Strand 3	B	1563	1567	anti-parallel
Strand 4	B	1572	1576	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1581	1584	first strand
Strand 2	B	1587	1592	anti-parallel
Strand 3	B	1607	1614	anti-parallel
Strand 4	B	1635	1642	parallel
Strand 5	B	1624	1630	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1653	1656	first strand
Strand 2	B	1659	1662	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1673	1675	first strand
Strand 2	B	1690	1692	anti-parallel
Strand 3	B	1712	1714	anti-parallel
Strand 4	B	1722	1725	anti-parallel

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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1732	1734	first strand
Strand 2	B	1739	1744	anti-parallel
Strand 3	B	1760	1766	anti-parallel
Strand 4	B	1785	1791	parallel
Strand 5	B	1775	1779	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1804	1808	first strand
Strand 2	B	1813	1817	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1824	1829	first strand
Strand 2	B	1832	1837	anti-parallel
Strand 3	B	1855	1858	anti-parallel
Strand 4	B	1863	1865	anti-parallel

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There are 5 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1868	1877	first strand
Strand 2	B	1882	1888	anti-parallel
Strand 3	B	1950	1957	anti-parallel
Strand 4	B	1976	1983	parallel
Strand 5	B	1967	1972	anti-parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1896	1898	first strand
Strand 2	B	1939	1943	anti-parallel
Strand 3	B	1925	1929	anti-parallel

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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1907	1909	first strand
Strand 2	B	1912	1914	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	60	61	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	60	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5P