Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V5Q entry

There are 4 chains in PDB entry 2V5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 39PRO 323
B
 GLU 39PRO 323
C
 SER 12ALA 141
D
 ASP 13ALA 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2V5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 89Right-handed 310
Helix 2
2
A
91 107Right-handed alpha
Helix 3
3
A
137 146Right-handed alpha
Helix 4
4
A
149 170Right-handed alpha
Helix 5
5
A
178 180Right-handed 310
Helix 6
6
A
219 224Right-handed alpha
Helix 7
7
A
230 247Right-handed alpha
Helix 8
8
A
255 266Right-handed alpha
Helix 9
9
A
275 286Right-handed alpha
Helix 10
10
A
289 293Right-handed 310
Helix 11
11
A
295 301Right-handed alpha
Helix 12
12
A
302 307Right-handed alpha
Helix 13
13
A
315 320Right-handed 310
Helix 14
14
B
87 89Right-handed 310
Helix 15
15
B
91 106Right-handed alpha
Helix 16
16
B
137 146Right-handed alpha
Helix 17
17
B
149 170Right-handed alpha
Helix 18
18
B
178 180Right-handed 310
Helix 19
19
B
219 224Right-handed alpha
Helix 20
20
B
230 247Right-handed alpha
Helix 21
21
B
255 266Right-handed alpha
Helix 22
22
B
275 286Right-handed alpha
Helix 23
23
B
289 293Right-handed 310
Helix 24
24
B
295 301Right-handed alpha
Helix 25
25
B
302 307Right-handed alpha
Helix 26
26
B
315 320Right-handed 310
Helix 27
27
C
12 25Right-handed alpha
Helix 28
28
C
26 36Right-handed alpha
Helix 29
29
C
49 57Right-handed alpha
Helix 30
30
C
59 69Right-handed alpha
Helix 31
31
C
82 91Right-handed alpha
Helix 32
32
C
92 102Right-handed alpha
Helix 33
33
C
115 123Right-handed alpha
Helix 34
34
C
125 135Right-handed alpha
Helix 35
35
D
13 25Right-handed alpha
Helix 36
36
D
26 36Right-handed alpha
Helix 37
37
D
49 58Right-handed alpha
Helix 38
38
D
59 69Right-handed alpha
Helix 39
39
D
82 91Right-handed alpha
Helix 40
40
D
92 102Right-handed alpha
Helix 41
41
D
115 123Right-handed alpha
Helix 42
42
D
125 135Right-handed alpha
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There are 6 sheets in PDB entry 2V5Q. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
52 62anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
78 85anti-parallel
Strand 5
A
125 130anti-parallel
Strand 6
A
116 121anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
199 200anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
190 192anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
51 62anti-parallel
Strand 3
B
65 72anti-parallel
Strand 4
B
78 85anti-parallel
Strand 5
B
125 130anti-parallel
Strand 6
B
116 121anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
199 200anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
190 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il