Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V5S entry

There are 2 chains in PDB entry 2V5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1GLY 388
B
 ALA -5GLY 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2V5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 71Right-handed 310
Helix 2
2
A
72 76Right-handed alpha
Helix 3
3
A
172 177Right-handed 310
Helix 4
4
A
278 282Right-handed 310
Helix 5
5
B
67 71Right-handed 310
Helix 6
6
B
72 76Right-handed alpha
Helix 7
7
B
128 132Right-handed 310
Helix 8
8
B
172 177Right-handed 310
Helix 9
9
B
278 282Right-handed 310
Helix 10
10
B
361 365Right-handed 310
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There are 25 sheets in PDB entry 2V5S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
27 31anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
96 101parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
35 40anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
96 101parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
90 92anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
61 63anti-parallel
Strand 3
A
54 55anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
125 126anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
201 204parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
166 168anti-parallel
Strand 3
A
158 160anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
135 142anti-parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
192 194anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
237 239anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
B
217 219anti-parallel
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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
295 313parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
243 249anti-parallel
Strand 5
A
256 258anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
295 313parallel
Strand 3
A
325 334anti-parallel
Strand 4
A
354 357anti-parallel
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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
265 268anti-parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
377 387parallel
Strand 3
A
366 374anti-parallel
Strand 4
A
338 343anti-parallel
Strand 5
A
346 347anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
27 31anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
96 101parallel
Strand 3
B
77 85anti-parallel
Strand 4
B
35 40anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
96 101parallel
Strand 3
B
77 85anti-parallel
Strand 4
B
90 92anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
61 63anti-parallel
Strand 3
B
54 55anti-parallel
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There are 8 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
199 204parallel
Strand 3
B
179 186anti-parallel
Strand 4
B
147 148first strand
Strand 5
B
135 142anti-parallel
Strand 6
B
179 186anti-parallel
Strand 7
B
192 194anti-parallel
Strand 8
B
179 186anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
166 168anti-parallel
Strand 3
B
158 160anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 213first strand
Strand 2
B
237 239anti-parallel
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There are 8 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
295 309parallel
Strand 3
B
256 258first strand
Strand 4
B
243 249anti-parallel
Strand 5
B
283 290anti-parallel
Strand 6
B
295 309anti-parallel
Strand 7
B
332 334anti-parallel
Strand 8
B
295 309anti-parallel
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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
271 274anti-parallel
Strand 3
B
265 268anti-parallel
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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 313first strand
Strand 2
B
325 329anti-parallel
Strand 3
B
354 357anti-parallel
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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
378 387parallel
Strand 3
B
366 373anti-parallel
Strand 4
B
338 343anti-parallel
Strand 5
B
346 347anti-parallel
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