Analysis of interatomic Contacts of Structural Units in PDB entry:
2V6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V6B entry

There are 4 chains in PDB entry 2V6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 22	GLY 324
B	MET 22	LYS 326
C	MET 22	LYS 326
D	MET 22	PHE 325

There are 50 helices in PDB entry 2V6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	30	43	Right-handed alpha
Helix 2	2	A	55	67	Right-handed alpha
Helix 3	3	A	84	89	Right-handed 310
Helix 4	4	A	112	131	Right-handed alpha
Helix 5	5	A	141	153	Right-handed alpha
Helix 6	6	A	165	181	Right-handed alpha
Helix 7	7	A	183	185	Right-handed 310
Helix 8	8	A	203	205	Right-handed 310
Helix 9	9	A	210	217	Right-handed alpha
Helix 10	10	A	221	233	Right-handed alpha
Helix 11	11	A	247	263	Right-handed alpha
Helix 12	12	A	308	324	Right-handed alpha
Helix 13	13	B	30	44	Right-handed alpha
Helix 14	14	B	55	68	Right-handed alpha
Helix 15	15	B	71	75	Right-handed 310
Helix 16	16	B	84	89	Right-handed 310
Helix 17	17	B	108	131	Right-handed alpha
Helix 18	18	B	141	153	Right-handed alpha
Helix 19	19	B	165	181	Right-handed alpha
Helix 20	20	B	183	185	Right-handed 310
Helix 21	21	B	203	205	Right-handed 310
Helix 22	22	B	210	216	Right-handed alpha
Helix 23	23	B	221	233	Right-handed alpha
Helix 24	24	B	247	263	Right-handed alpha
Helix 25	25	B	308	326	Right-handed alpha
Helix 26	26	C	30	43	Right-handed alpha
Helix 27	27	C	55	67	Right-handed alpha
Helix 28	28	C	68	70	Right-handed 310
Helix 29	29	C	84	89	Right-handed 310
Helix 30	30	C	108	131	Right-handed alpha
Helix 31	31	C	141	153	Right-handed alpha
Helix 32	32	C	165	181	Right-handed alpha
Helix 33	33	C	183	185	Right-handed 310
Helix 34	34	C	203	205	Right-handed 310
Helix 35	35	C	210	217	Right-handed alpha
Helix 36	36	C	221	233	Right-handed alpha
Helix 37	37	C	247	263	Right-handed alpha
Helix 38	38	C	308	326	Right-handed alpha
Helix 39	39	D	30	43	Right-handed alpha
Helix 40	40	D	55	68	Right-handed alpha
Helix 41	41	D	84	89	Right-handed 310
Helix 42	42	D	109	131	Right-handed alpha
Helix 43	43	D	141	153	Right-handed alpha
Helix 44	44	D	165	181	Right-handed alpha
Helix 45	45	D	183	185	Right-handed 310
Helix 46	46	D	203	205	Right-handed 310
Helix 47	47	D	210	216	Right-handed alpha
Helix 48	48	D	221	233	Right-handed alpha
Helix 49	49	D	247	264	Right-handed alpha
Helix 50	50	D	308	325	Right-handed alpha

There are 18 sheets in PDB entry 2V6B. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, DE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	83	first strand
Strand 2	A	48	52	parallel
Strand 3	A	23	27	parallel
Strand 4	A	93	96	parallel
Strand 5	A	134	137	parallel
Strand 6	A	160	162	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	207	208	anti-parallel
Strand 3	A	209	209	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	199	201	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	274	first strand
Strand 2	A	286	294	anti-parallel
Strand 3	A	297	302	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	48	52	parallel
Strand 3	B	23	27	parallel
Strand 4	B	93	96	parallel
Strand 5	B	134	137	parallel
Strand 6	B	160	162	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	207	208	anti-parallel
Strand 3	B	209	209	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	200	201	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	269	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	297	302	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	286	288	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	83	first strand
Strand 2	C	48	52	parallel
Strand 3	C	23	27	parallel
Strand 4	C	93	96	parallel
Strand 5	C	134	137	parallel
Strand 6	C	160	162	parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	207	208	anti-parallel
Strand 3	C	209	209	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	200	201	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	274	first strand
Strand 2	C	286	294	anti-parallel
Strand 3	C	297	302	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	83	first strand
Strand 2	D	48	52	parallel
Strand 3	D	23	27	parallel
Strand 4	D	93	96	parallel
Strand 5	D	134	137	parallel
Strand 6	D	160	162	parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	207	208	anti-parallel
Strand 3	D	209	209	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	200	201	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	269	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	297	302	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	286	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V6B