Analysis of interatomic Contacts of Structural Units in PDB entry:
2V6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V6C entry

There is 1 chain in PDB entry 2V6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8SER 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2V6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 37Right-handed alpha
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
137 157Right-handed alpha
Helix 4
4
A
162 177Right-handed alpha
Helix 5
5
A
206 213Right-handed alpha
Helix 6
6
A
259 273Right-handed alpha
Helix 7
7
A
281 283Right-handed 310
Helix 8
8
A
285 299Right-handed alpha
Helix 9
9
A
339 342Right-handed 310
Helix 10
10
A
351 358Right-handed alpha
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There are 5 sheets in PDB entry 2V6C. Click on sheet of interest to get list of strands forming it: CA, CB, CC, CD, CE,

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 82first strand
Strand 2
A
105 114anti-parallel
Strand 3
A
117 126anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
308 309anti-parallel
Strand 3
A
238 239anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
223 231anti-parallel
Strand 3
A
186 189anti-parallel
Strand 4
A
200 202anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
223 231anti-parallel
Strand 3
A
316 326anti-parallel
Strand 4
A
329 332anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
246 249anti-parallel
Strand 3
A
302 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il