Analysis of interatomic Contacts of Structural Units in PDB entry:
2V6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V6J entry

There is 1 chain in PDB entry 2V6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ARG 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2V6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
40 51Right-handed alpha
Helix 3
3
A
78 88Right-handed alpha
Helix 4
4
A
106 122Right-handed alpha
Helix 5
5
A
164 169Right-handed alpha
Helix 6
6
A
180 194Right-handed alpha
Helix 7
7
A
205 210Right-handed alpha
Helix 8
8
A
211 216Right-handed alpha
Helix 9
9
A
225 228Right-handed 310
Helix 10
10
A
263 272Right-handed alpha
Helix 11
11
A
298 309Right-handed alpha
Helix 12
12
A
322 329Right-handed 310
Helix 13
13
A
339 352Right-handed alpha
Helix 14
14
A
356 366Right-handed alpha
Helix 15
15
A
373 377Right-handed 310
Helix 16
16
A
380 384Right-handed 310
Helix 17
17
A
411 415Right-handed 310
Helix 18
18
A
416 428Right-handed alpha
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There are 5 sheets in PDB entry 2V6J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
126 130parallel
Strand 3
A
96 100parallel
Strand 4
A
34 38parallel
Strand 5
A
73 77parallel
Strand 6
A
56 58parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
284 287parallel
Strand 3
A
237 240parallel
Strand 4
A
174 177parallel
Strand 5
A
220 223parallel
Strand 6
A
198 201parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 249first strand
Strand 2
A
254 261anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
390 391anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
401 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il