Analysis of interatomic Contacts of Structural Units in PDB entry:
2V6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V6M entry

There are 4 chains in PDB entry 2V6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 22PHE 331
B
 MET 22PHE 331
C
 MET 22PHE 331
D
 MET 22PHE 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 2V6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 43Right-handed alpha
Helix 2
2
A
55 68Right-handed alpha
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
84 89Right-handed 310
Helix 5
5
A
108 131Right-handed alpha
Helix 6
6
A
141 154Right-handed alpha
Helix 7
7
A
156 158Right-handed 310
Helix 8
8
A
165 181Right-handed alpha
Helix 9
9
A
183 187Right-handed 310
Helix 10
10
A
213 217Right-handed 310
Helix 11
11
A
221 234Right-handed alpha
Helix 12
12
A
234 244Right-handed alpha
Helix 13
13
A
247 263Right-handed alpha
Helix 14
14
A
308 330Right-handed alpha
Helix 15
15
B
30 44Right-handed alpha
Helix 16
16
B
55 68Right-handed alpha
Helix 17
17
B
69 73Right-handed 310
Helix 18
18
B
84 89Right-handed 310
Helix 19
19
B
111 131Right-handed alpha
Helix 20
20
B
141 154Right-handed alpha
Helix 21
21
B
156 158Right-handed 310
Helix 22
22
B
165 181Right-handed alpha
Helix 23
23
B
183 187Right-handed 310
Helix 24
24
B
213 217Right-handed 310
Helix 25
25
B
221 234Right-handed alpha
Helix 26
26
B
234 244Right-handed alpha
Helix 27
27
B
247 263Right-handed alpha
Helix 28
28
B
308 329Right-handed alpha
Helix 29
29
C
30 43Right-handed alpha
Helix 30
30
C
55 68Right-handed alpha
Helix 31
31
C
69 73Right-handed 310
Helix 32
32
C
84 89Right-handed 310
Helix 33
33
C
108 131Right-handed alpha
Helix 34
34
C
141 154Right-handed alpha
Helix 35
35
C
156 158Right-handed 310
Helix 36
36
C
165 181Right-handed alpha
Helix 37
37
C
183 187Right-handed 310
Helix 38
38
C
221 234Right-handed alpha
Helix 39
39
C
234 244Right-handed alpha
Helix 40
40
C
247 263Right-handed alpha
Helix 41
41
C
308 330Right-handed alpha
Helix 42
42
D
30 43Right-handed alpha
Helix 43
43
D
55 68Right-handed alpha
Helix 44
44
D
69 73Right-handed 310
Helix 45
45
D
84 89Right-handed 310
Helix 46
46
D
111 131Right-handed alpha
Helix 47
47
D
141 154Right-handed alpha
Helix 48
48
D
156 158Right-handed 310
Helix 49
49
D
165 181Right-handed alpha
Helix 50
50
D
183 187Right-handed 310
Helix 51
51
D
211 216Right-handed alpha
Helix 52
52
D
221 234Right-handed alpha
Helix 53
53
D
234 244Right-handed alpha
Helix 54
54
D
247 263Right-handed alpha
Helix 55
55
D
308 330Right-handed alpha
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There are 12 sheets in PDB entry 2V6M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
48 52parallel
Strand 3
A
23 27parallel
Strand 4
A
91 96parallel
Strand 5
A
134 137parallel
Strand 6
A
160 162parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
200 207anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 278first strand
Strand 2
A
281 294anti-parallel
Strand 3
A
297 302anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 83first strand
Strand 2
B
48 52parallel
Strand 3
B
23 27parallel
Strand 4
B
93 96parallel
Strand 5
B
134 137parallel
Strand 6
B
160 162parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
200 201anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 278first strand
Strand 2
B
281 294anti-parallel
Strand 3
B
297 302anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 83first strand
Strand 2
C
48 52parallel
Strand 3
C
23 27parallel
Strand 4
C
93 96parallel
Strand 5
C
134 137parallel
Strand 6
C
160 162parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
200 201anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 278first strand
Strand 2
C
281 294anti-parallel
Strand 3
C
297 302anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 80first strand
Strand 2
D
48 52parallel
Strand 3
D
23 27parallel
Strand 4
D
93 96parallel
Strand 5
D
134 137parallel
Strand 6
D
160 162parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
191 192first strand
Strand 2
D
200 201anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
267 278first strand
Strand 2
D
281 294anti-parallel
Strand 3
D
297 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il