Analysis of interatomic Contacts of Structural Units in PDB entry:
2V6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V6O entry

There is 1 chain in PDB entry 2V6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8VAL 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 2V6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
28 41Right-handed alpha
Helix 3
3
A
51 53Right-handed 310
Helix 4
4
A
55 68Right-handed alpha
Helix 5
5
A
84 94Right-handed alpha
Helix 6
6
A
96 102Right-handed alpha
Helix 7
7
A
116 129Right-handed alpha
Helix 8
8
A
152 158Right-handed alpha
Helix 9
9
A
158 181Right-handed alpha
Helix 10
10
A
193 219Right-handed alpha
Helix 11
11
A
268 273Right-handed alpha
Helix 12
12
A
275 280Right-handed alpha
Helix 13
13
A
295 308Right-handed alpha
Helix 14
14
A
325 338Right-handed alpha
Helix 15
15
A
432 434Right-handed 310
Helix 16
16
A
441 458Right-handed alpha
Helix 17
17
A
485 494Right-handed alpha
Helix 18
18
A
507 513Right-handed alpha
Helix 19
19
A
543 557Right-handed alpha
Helix 20
20
A
560 567Right-handed alpha
Helix 21
21
A
574 579Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 2V6O. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
20 24parallel
Strand 3
A
74 77anti-parallel
Strand 4
A
80 83anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
133 136parallel
Strand 3
A
108 113parallel
Strand 4
A
245 255parallel
Strand 5
A
235 239anti-parallel
Strand 6
A
227 230anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
133 136parallel
Strand 3
A
108 113parallel
Strand 4
A
245 255parallel
Strand 5
A
428 430parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
393 394anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
312 315parallel
Strand 3
A
289 292parallel
Strand 4
A
386 389parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 356first strand
Strand 2
A
367 374anti-parallel
Strand 3
A
379 384anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 473first strand
Strand 2
A
479 483anti-parallel
Strand 3
A
533 540anti-parallel
Strand 4
A
520 527anti-parallel
Strand 5
A
498 505anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il