Analysis of interatomic Contacts of Structural Units in PDB entry:
2V78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V78 entry

There are 3 chains in PDB entry 2V78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LYS 312
B
 VAL 2LYS 312
C
 VAL 2LYS 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 2V78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
34 46Right-handed alpha
Helix 3
3
A
59 72Right-handed alpha
Helix 4
4
A
112 116Right-handed 310
Helix 5
5
A
117 121Right-handed 310
Helix 6
6
A
122 128Right-handed alpha
Helix 7
7
A
136 142Right-handed alpha
Helix 8
8
A
142 156Right-handed alpha
Helix 9
9
A
166 170Right-handed 310
Helix 10
10
A
172 187Right-handed alpha
Helix 11
11
A
195 204Right-handed alpha
Helix 12
12
A
207 218Right-handed alpha
Helix 13
13
A
228 230Right-handed 310
Helix 14
14
A
255 270Right-handed alpha
Helix 15
15
A
273 290Right-handed alpha
Helix 16
16
A
300 311Right-handed alpha
Helix 17
17
B
21 25Right-handed 310
Helix 18
18
B
34 46Right-handed alpha
Helix 19
19
B
59 72Right-handed alpha
Helix 20
20
B
112 116Right-handed 310
Helix 21
21
B
117 121Right-handed 310
Helix 22
22
B
122 128Right-handed alpha
Helix 23
23
B
136 142Right-handed alpha
Helix 24
24
B
142 156Right-handed alpha
Helix 25
25
B
166 170Right-handed 310
Helix 26
26
B
172 187Right-handed alpha
Helix 27
27
B
195 204Right-handed alpha
Helix 28
28
B
207 218Right-handed alpha
Helix 29
29
B
228 230Right-handed 310
Helix 30
30
B
255 270Right-handed alpha
Helix 31
31
B
273 289Right-handed alpha
Helix 32
32
B
300 311Right-handed alpha
Helix 33
33
C
21 25Right-handed 310
Helix 34
34
C
34 46Right-handed alpha
Helix 35
35
C
59 72Right-handed alpha
Helix 36
36
C
111 116Right-handed 310
Helix 37
37
C
117 121Right-handed 310
Helix 38
38
C
122 128Right-handed alpha
Helix 39
39
C
136 142Right-handed alpha
Helix 40
40
C
142 156Right-handed alpha
Helix 41
41
C
166 170Right-handed 310
Helix 42
42
C
172 187Right-handed alpha
Helix 43
43
C
195 204Right-handed alpha
Helix 44
44
C
207 218Right-handed alpha
Helix 45
45
C
228 230Right-handed 310
Helix 46
46
C
255 270Right-handed alpha
Helix 47
47
C
273 289Right-handed alpha
Helix 48
48
C
300 311Right-handed alpha
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There are 5 sheets in PDB entry 2V78. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
50 57parallel
Strand 3
A
4 7parallel
Strand 4
A
131 135parallel
Strand 5
A
159 162parallel
Strand 6
A
189 194parallel
Strand 7
A
220 226parallel
Strand 8
A
232 236anti-parallel
Strand 9
A
239 243anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
11 16parallel
Strand 4
A
27 33anti-parallel
Strand 5
B
27 33anti-parallel
Strand 6
B
11 16anti-parallel
Strand 7
B
89 94parallel
Strand 8
B
102 107anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
50 57parallel
Strand 3
B
4 7parallel
Strand 4
B
131 135parallel
Strand 5
B
159 162parallel
Strand 6
B
189 194parallel
Strand 7
B
220 226parallel
Strand 8
B
232 236anti-parallel
Strand 9
B
239 243anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 82first strand
Strand 2
C
50 57parallel
Strand 3
C
4 7parallel
Strand 4
C
131 135parallel
Strand 5
C
159 162parallel
Strand 6
C
189 194parallel
Strand 7
C
220 226parallel
Strand 8
C
232 236anti-parallel
Strand 9
C
239 243anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 33first strand
Strand 2
C
11 16anti-parallel
Strand 3
C
89 94parallel
Strand 4
C
102 107anti-parallel
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