Analysis of interatomic Contacts of Structural Units in PDB entry:
2V7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V7Q entry

There are 10 chains in PDB entry 2V7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 24	ALA 510
B	ASP 24	ALA 510
C	VAL 23	ALA 510
D	THR 9	HIS 477
E	THR 10	ALA 474
F	THR 9	ALA 474
G	ALA 1	LEU 272
H	GLN 15	LEU 145
I	VAL 1	VAL 47
J	VAL 8	GLU 50

There are145 helices in PDB entry 2V7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	78	82	Right-handed 310
Helix 2	2	A	100	104	Right-handed 310
Helix 3	3	A	150	157	Right-handed alpha
Helix 4	4	A	174	186	Right-handed alpha
Helix 5	5	A	186	191	Right-handed alpha
Helix 6	6	A	209	223	Right-handed alpha
Helix 7	7	A	225	227	Right-handed 310
Helix 8	8	A	239	260	Right-handed alpha
Helix 9	9	A	270	285	Right-handed alpha
Helix 10	10	A	290	294	Right-handed 310
Helix 11	11	A	297	307	Right-handed alpha
Helix 12	12	A	313	317	Right-handed 310
Helix 13	13	A	336	346	Right-handed alpha
Helix 14	14	A	353	360	Right-handed alpha
Helix 15	15	A	374	379	Right-handed 310
Helix 16	16	A	380	398	Right-handed alpha
Helix 17	17	A	400	406	Right-handed alpha
Helix 18	18	A	411	428	Right-handed alpha
Helix 19	19	A	437	450	Right-handed alpha
Helix 20	20	A	457	459	Right-handed 310
Helix 21	21	A	460	476	Right-handed alpha
Helix 22	22	A	476	487	Right-handed alpha
Helix 23	23	A	490	507	Right-handed alpha
Helix 24	24	B	78	82	Right-handed 310
Helix 25	25	B	100	104	Right-handed 310
Helix 26	26	B	150	157	Right-handed alpha
Helix 27	27	B	174	186	Right-handed alpha
Helix 28	28	B	186	191	Right-handed alpha
Helix 29	29	B	194	198	Right-handed 310
Helix 30	30	B	209	223	Right-handed alpha
Helix 31	31	B	225	227	Right-handed 310
Helix 32	32	B	239	259	Right-handed alpha
Helix 33	33	B	270	285	Right-handed alpha
Helix 34	34	B	290	294	Right-handed 310
Helix 35	35	B	297	307	Right-handed alpha
Helix 36	36	B	313	317	Right-handed 310
Helix 37	37	B	336	344	Right-handed alpha
Helix 38	38	B	353	360	Right-handed alpha
Helix 39	39	B	374	379	Right-handed 310
Helix 40	40	B	380	391	Right-handed alpha
Helix 41	41	B	391	400	Right-handed alpha
Helix 42	42	B	412	428	Right-handed alpha
Helix 43	43	B	437	450	Right-handed alpha
Helix 44	44	B	457	459	Right-handed 310
Helix 45	45	B	460	475	Right-handed alpha
Helix 46	46	B	476	487	Right-handed alpha
Helix 47	47	B	490	506	Right-handed alpha
Helix 48	48	C	78	82	Right-handed 310
Helix 49	49	C	100	104	Right-handed 310
Helix 50	50	C	150	157	Right-handed alpha
Helix 51	51	C	174	186	Right-handed alpha
Helix 52	52	C	186	191	Right-handed alpha
Helix 53	53	C	194	198	Right-handed 310
Helix 54	54	C	209	223	Right-handed alpha
Helix 55	55	C	225	227	Right-handed 310
Helix 56	56	C	239	260	Right-handed alpha
Helix 57	57	C	270	285	Right-handed alpha
Helix 58	58	C	290	294	Right-handed 310
Helix 59	59	C	297	307	Right-handed alpha
Helix 60	60	C	313	317	Right-handed 310
Helix 61	61	C	336	346	Right-handed alpha
Helix 62	62	C	353	360	Right-handed alpha
Helix 63	63	C	381	399	Right-handed alpha
Helix 64	64	C	400	404	Right-handed 310
Helix 65	65	C	418	428	Right-handed alpha
Helix 66	66	C	437	450	Right-handed alpha
Helix 67	67	C	460	476	Right-handed alpha
Helix 68	68	C	495	509	Right-handed alpha
Helix 69	69	D	87	91	Right-handed 310
Helix 70	70	D	122	126	Right-handed 310
Helix 71	71	D	137	144	Right-handed alpha
Helix 72	72	D	161	173	Right-handed alpha
Helix 73	73	D	189	203	Right-handed alpha
Helix 74	74	D	225	247	Right-handed alpha
Helix 75	75	D	258	270	Right-handed alpha
Helix 76	76	D	277	281	Right-handed 310
Helix 77	77	D	284	294	Right-handed alpha
Helix 78	78	D	313	316	Right-handed 310
Helix 79	79	D	319	326	Right-handed alpha
Helix 80	80	D	327	329	Right-handed 310
Helix 81	81	D	336	342	Right-handed alpha
Helix 82	82	D	359	364	Right-handed alpha
Helix 83	83	D	364	392	Right-handed alpha
Helix 84	84	D	397	414	Right-handed alpha
Helix 85	85	D	418	422	Right-handed 310
Helix 86	86	D	433	447	Right-handed alpha
Helix 87	87	D	453	458	Right-handed 310
Helix 88	88	D	462	476	Right-handed alpha
Helix 89	89	E	87	91	Right-handed 310
Helix 90	90	E	122	126	Right-handed 310
Helix 91	91	E	137	144	Right-handed alpha
Helix 92	92	E	161	177	Right-handed alpha
Helix 93	93	E	189	204	Right-handed alpha
Helix 94	94	E	225	247	Right-handed alpha
Helix 95	95	E	257	272	Right-handed alpha
Helix 96	96	E	277	281	Right-handed 310
Helix 97	97	E	284	294	Right-handed alpha
Helix 98	98	E	312	316	Right-handed 310
Helix 99	99	E	319	327	Right-handed alpha
Helix 100	100	E	336	342	Right-handed alpha
Helix 101	101	E	359	364	Right-handed alpha
Helix 102	102	E	364	389	Right-handed alpha
Helix 103	103	E	392	396	Right-handed 310
Helix 104	104	E	397	413	Right-handed alpha
Helix 105	105	E	418	420	Right-handed 310
Helix 106	106	E	421	426	Right-handed alpha
Helix 107	107	E	433	446	Right-handed alpha
Helix 108	108	E	453	457	Right-handed 310
Helix 109	109	E	462	473	Right-handed alpha
Helix 110	110	F	87	90	Right-handed 310
Helix 111	111	F	122	126	Right-handed 310
Helix 112	112	F	137	144	Right-handed alpha
Helix 113	113	F	161	174	Right-handed alpha
Helix 114	114	F	189	204	Right-handed alpha
Helix 115	115	F	225	246	Right-handed alpha
Helix 116	116	F	258	273	Right-handed alpha
Helix 117	117	F	277	281	Right-handed 310
Helix 118	118	F	284	294	Right-handed alpha
Helix 119	119	F	313	316	Right-handed 310
Helix 120	120	F	319	326	Right-handed alpha
Helix 121	121	F	327	329	Right-handed 310
Helix 122	122	F	336	341	Right-handed alpha
Helix 123	123	F	359	364	Right-handed alpha
Helix 124	124	F	364	392	Right-handed alpha
Helix 125	125	F	393	396	Right-handed 310
Helix 126	126	F	397	414	Right-handed alpha
Helix 127	127	F	418	420	Right-handed 310
Helix 128	128	F	421	426	Right-handed alpha
Helix 129	129	F	433	446	Right-handed alpha
Helix 130	130	F	453	458	Right-handed 310
Helix 131	131	F	463	472	Right-handed alpha
Helix 132	132	G	2	49	Right-handed alpha
Helix 133	133	G	51	55	Right-handed 310
Helix 134	134	G	80	96	Right-handed alpha
Helix 135	135	G	109	121	Right-handed alpha
Helix 136	136	G	137	150	Right-handed alpha
Helix 137	137	G	189	193	Right-handed 310
Helix 138	138	G	197	272	Right-handed alpha
Helix 139	139	H	99	102	Right-handed 310
Helix 140	140	H	104	120	Right-handed alpha
Helix 141	141	H	124	145	Right-handed alpha
Helix 142	142	I	10	24	Right-handed alpha
Helix 143	143	I	31	36	Right-handed alpha
Helix 144	144	J	13	18	Right-handed alpha
Helix 145	145	J	20	49	Right-handed alpha

There are 22 sheets in PDB entry 2V7Q. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, EA, EB, EC, FA, FB, FC, GA, HA,

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	35	first strand
Strand 2	A	87	94	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	E	11	17	anti-parallel
Strand 6	E	20	24	parallel
Strand 7	E	57	62	parallel
Strand 8	E	46	54	anti-parallel
Strand 9	E	35	38	anti-parallel
Strand 10	E	74	77	anti-parallel
Strand 11	E	11	17	parallel
Strand 12	A	60	66	anti-parallel
Strand 13	A	51	55	anti-parallel
Strand 14	A	28	35	first strand

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 11 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	229	234	parallel
Strand 3	A	200	206	parallel
Strand 4	A	263	269	parallel
Strand 5	A	320	328	parallel
Strand 6	A	310	311	anti-parallel
Strand 7	A	320	328	anti-parallel
Strand 8	A	371	372	first strand
Strand 9	A	348	352	anti-parallel
Strand 10	A	166	169	parallel
Strand 11	A	320	328	parallel

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There are 28 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	F	10	17	anti-parallel
Strand 6	F	20	24	anti-parallel
Strand 7	B	39	43	first strand
Strand 8	B	28	33	anti-parallel
Strand 9	B	51	55	first strand
Strand 10	B	87	94	anti-parallel
Strand 11	B	60	66	first strand
Strand 12	B	51	55	anti-parallel
Strand 13	B	71	75	first strand
Strand 14	B	39	43	anti-parallel
Strand 15	B	87	94	first strand
Strand 16	B	28	33	anti-parallel
Strand 17	F	10	17	first strand
Strand 18	B	60	66	anti-parallel
Strand 19	F	20	24	first strand
Strand 20	F	10	17	anti-parallel
Strand 21	F	34	38	first strand
Strand 22	F	74	81	anti-parallel
Strand 23	F	46	54	first strand
Strand 24	F	34	38	anti-parallel
Strand 25	F	57	62	first strand
Strand 26	F	20	24	anti-parallel
Strand 27	F	74	81	first strand
Strand 28	F	10	17	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	229	234	parallel
Strand 3	B	200	206	parallel
Strand 4	B	263	269	parallel
Strand 5	B	320	328	parallel
Strand 6	B	166	169	parallel
Strand 7	B	348	351	parallel
Strand 8	B	371	372	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	159	160	anti-parallel

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There are 24 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	87	94	anti-parallel
Strand 3	C	38	43	first strand
Strand 4	C	28	35	anti-parallel
Strand 5	C	51	55	first strand
Strand 6	C	87	94	anti-parallel
Strand 7	C	60	66	first strand
Strand 8	C	51	55	anti-parallel
Strand 9	C	71	75	first strand
Strand 10	C	38	43	anti-parallel
Strand 11	C	87	94	first strand
Strand 12	C	28	35	anti-parallel
Strand 13	D	10	17	first strand
Strand 14	C	60	66	anti-parallel
Strand 15	D	20	25	first strand
Strand 16	D	10	17	anti-parallel
Strand 17	D	35	38	first strand
Strand 18	D	46	54	anti-parallel
Strand 19	D	46	54	first strand
Strand 20	D	35	38	anti-parallel
Strand 21	D	57	62	first strand
Strand 22	D	20	25	parallel
Strand 23	D	74	77	first strand
Strand 24	D	10	17	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 10 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	229	234	parallel
Strand 3	C	200	206	parallel
Strand 4	C	263	269	parallel
Strand 5	C	320	328	parallel
Strand 6	C	310	311	anti-parallel
Strand 7	C	320	328	anti-parallel
Strand 8	C	348	351	first strand
Strand 9	C	165	169	parallel
Strand 10	C	320	328	parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	159	160	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	113	115	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	215	220	parallel
Strand 3	D	180	186	parallel
Strand 4	D	251	256	parallel
Strand 5	D	304	311	parallel
Strand 6	D	151	156	parallel
Strand 7	D	331	334	parallel
Strand 8	D	354	355	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	146	147	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	86	first strand
Strand 2	E	112	115	anti-parallel

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There are 8 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	215	220	parallel
Strand 3	E	181	186	parallel
Strand 4	E	250	256	parallel
Strand 5	E	303	309	parallel
Strand 6	E	151	155	parallel
Strand 7	E	331	334	parallel
Strand 8	E	354	355	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	133	first strand
Strand 2	E	146	147	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	86	first strand
Strand 2	F	112	115	anti-parallel

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There are 8 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	215	220	parallel
Strand 3	F	180	186	parallel
Strand 4	F	251	256	parallel
Strand 5	F	304	311	parallel
Strand 6	F	151	156	parallel
Strand 7	F	331	334	parallel
Strand 8	F	354	355	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	133	first strand
Strand 2	F	146	147	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	177	first strand
Strand 2	G	157	165	anti-parallel
Strand 3	G	66	71	parallel
Strand 4	G	103	108	parallel
Strand 5	G	124	129	parallel
Strand 6	I	43	45	anti-parallel

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There are 11 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	48	first strand
Strand 2	H	26	40	anti-parallel
Strand 3	H	54	57	first strand
Strand 4	H	80	84	anti-parallel
Strand 5	H	90	94	anti-parallel
Strand 6	H	16	21	parallel
Strand 7	H	26	40	anti-parallel
Strand 8	H	97	98	first strand
Strand 9	H	72	77	anti-parallel
Strand 10	H	61	67	anti-parallel
Strand 11	H	26	40	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V7Q