Analysis of interatomic Contacts of Structural Units in PDB entry:
2V84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V84 entry

There is 1 chain in PDB entry 2V84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ARG 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2V84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
62 72Right-handed alpha
Helix 4
4
A
79 83Right-handed 310
Helix 5
5
A
83 88Right-handed 310
Helix 6
6
A
90 97Right-handed alpha
Helix 7
7
A
129 135Right-handed 310
Helix 8
8
A
135 139Right-handed 310
Helix 9
9
A
147 159Right-handed alpha
Helix 10
10
A
167 182Right-handed alpha
Helix 11
11
A
183 186Right-handed 310
Helix 12
12
A
193 200Right-handed alpha
Helix 13
13
A
209 217Right-handed alpha
Helix 14
14
A
218 223Right-handed 310
Helix 15
15
A
250 262Right-handed alpha
Helix 16
16
A
263 275Right-handed alpha
Helix 17
17
A
283 288Right-handed 310
Helix 18
18
A
295 300Right-handed 310
Helix 19
19
A
308 310Right-handed 310
Helix 20
20
A
311 325Right-handed alpha
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There are 4 sheets in PDB entry 2V84. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
8 14parallel
Strand 3
A
58 59parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
244 245anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
236 242anti-parallel
Strand 3
A
303 304parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
142 144parallel
Strand 3
A
205 208parallel
Strand 4
A
115 119anti-parallel
Strand 5
A
225 228anti-parallel
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