Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V8H entry

There are 4 chains in PDB entry 2V8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 28PRO 458
B
LEU 28PRO 458
C
PRO 27PRO 458
D
LEU 28PRO 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2V8H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
33 46Right-handed alpha
Helix 2
2
A
67 84Right-handed alpha
Helix 3
3
A
126 144Right-handed alpha
Helix 4
4
A
168 175Right-handed alpha
Helix 5
5
A
179 185Right-handed alpha
Helix 6
6
A
196 205Right-handed alpha
Helix 7
7
A
231 236Right-handed alpha
Helix 8
8
A
267 271Right-handed 310
Helix 9
9
A
273 292Right-handed alpha
Helix 10
10
A
325 344Right-handed alpha
Helix 11
11
A
368 383Right-handed alpha
Helix 12
12
A
384 386Right-handed 310
Helix 13
13
A
398 403Right-handed alpha
Helix 14
14
A
415 419Right-handed 310
Helix 15
15
A
428 457Right-handed alpha
Helix 16
16
B
33 46Right-handed alpha
Helix 17
17
B
67 84Right-handed alpha
Helix 18
18
B
126 144Right-handed alpha
Helix 19
19
B
168 175Right-handed alpha
Helix 20
20
B
179 185Right-handed alpha
Helix 21
21
B
196 205Right-handed alpha
Helix 22
22
B
231 236Right-handed alpha
Helix 23
23
B
267 271Right-handed 310
Helix 24
24
B
273 292Right-handed alpha
Helix 25
25
B
325 344Right-handed alpha
Helix 26
26
B
368 383Right-handed alpha
Helix 27
27
B
384 386Right-handed 310
Helix 28
28
B
398 403Right-handed alpha
Helix 29
29
B
415 419Right-handed 310
Helix 30
30
B
428 457Right-handed alpha
Helix 31
31
C
33 46Right-handed alpha
Helix 32
32
C
67 84Right-handed alpha
Helix 33
33
C
126 143Right-handed alpha
Helix 34
34
C
168 175Right-handed alpha
Helix 35
35
C
179 185Right-handed alpha
Helix 36
36
C
196 205Right-handed alpha
Helix 37
37
C
231 236Right-handed alpha
Helix 38
38
C
267 271Right-handed 310
Helix 39
39
C
273 292Right-handed alpha
Helix 40
40
C
325 344Right-handed alpha
Helix 41
41
C
368 383Right-handed alpha
Helix 42
42
C
384 386Right-handed 310
Helix 43
43
C
397 403Right-handed alpha
Helix 44
44
C
415 419Right-handed 310
Helix 45
45
C
428 457Right-handed alpha
Helix 46
46
D
33 46Right-handed alpha
Helix 47
47
D
67 84Right-handed alpha
Helix 48
48
D
126 143Right-handed alpha
Helix 49
49
D
168 175Right-handed alpha
Helix 50
50
D
179 185Right-handed alpha
Helix 51
51
D
196 205Right-handed alpha
Helix 52
52
D
231 236Right-handed alpha
Helix 53
53
D
267 271Right-handed 310
Helix 54
54
D
273 292Right-handed alpha
Helix 55
55
D
325 344Right-handed alpha
Helix 56
56
D
368 383Right-handed alpha
Helix 57
57
D
384 386Right-handed 310
Helix 58
58
D
398 403Right-handed alpha
Helix 59
59
D
415 419Right-handed 310
Helix 60
60
D
428 457Right-handed alpha
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There are 19 sheets in PDB entry 2V8H. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 49first strand
Strand 2
A
60 61anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 90first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
109 113parallel
Strand 5
A
221 227parallel
Strand 6
A
408 413parallel
Strand 7
A
240 246anti-parallel
Strand 8
A
388 393parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 90first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
109 113parallel
Strand 5
A
221 227parallel
Strand 6
A
408 413parallel
Strand 7
A
240 246anti-parallel
Strand 8
A
365 366anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 297first strand
Strand 2
A
314 323anti-parallel
Strand 3
A
248 257anti-parallel
Strand 4
A
353 362anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 297first strand
Strand 2
A
314 323anti-parallel
Strand 3
A
301 304anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
261 262first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 49first strand
Strand 2
B
60 61anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
87 90first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
151 155anti-parallel
Strand 4
B
109 113parallel
Strand 5
B
221 227parallel
Strand 6
B
408 413parallel
Strand 7
B
240 246anti-parallel
Strand 8
B
388 393parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
87 90first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
151 155anti-parallel
Strand 4
B
109 113parallel
Strand 5
B
221 227parallel
Strand 6
B
408 413parallel
Strand 7
B
240 246anti-parallel
Strand 8
B
365 366anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
295 297first strand
Strand 2
B
314 323anti-parallel
Strand 3
B
301 304anti-parallel
Strand 4
B
314 323anti-parallel
Strand 5
B
353 362first strand
Strand 6
B
248 257anti-parallel
Strand 7
B
314 323anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
261 262first strand
Strand 2
B
310 311anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 49first strand
Strand 2
C
60 61anti-parallel
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There are 11 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
87 90first strand
Strand 2
C
96 100anti-parallel
Strand 3
C
151 155anti-parallel
Strand 4
C
109 113parallel
Strand 5
C
221 227parallel
Strand 6
C
408 413parallel
Strand 7
C
240 246anti-parallel
Strand 8
C
365 366anti-parallel
Strand 9
C
240 246anti-parallel
Strand 10
C
388 393parallel
Strand 11
C
240 246parallel
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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
295 297first strand
Strand 2
C
314 323anti-parallel
Strand 3
C
301 304anti-parallel
Strand 4
C
314 323anti-parallel
Strand 5
C
353 362first strand
Strand 6
C
248 257anti-parallel
Strand 7
C
314 323anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
261 262first strand
Strand 2
C
310 311anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 49first strand
Strand 2
D
60 61anti-parallel
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There are 11 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
87 90first strand
Strand 2
D
96 100anti-parallel
Strand 3
D
151 155anti-parallel
Strand 4
D
109 113parallel
Strand 5
D
221 227parallel
Strand 6
D
408 413parallel
Strand 7
D
240 246anti-parallel
Strand 8
D
365 366anti-parallel
Strand 9
D
240 246anti-parallel
Strand 10
D
388 393parallel
Strand 11
D
240 246parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
295 297first strand
Strand 2
D
314 323anti-parallel
Strand 3
D
301 304anti-parallel
Strand 4
D
314 323anti-parallel
Strand 5
D
353 362first strand
Strand 6
D
248 257anti-parallel
Strand 7
D
314 323anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
261 262first strand
Strand 2
D
310 311anti-parallel
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