Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2V8H entry

There are 4 chains in PDB entry 2V8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 28	PRO 458
B	LEU 28	PRO 458
C	PRO 27	PRO 458
D	LEU 28	PRO 458

There are 60 helices in PDB entry 2V8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	33	46	Right-handed alpha
Helix 2	2	A	67	84	Right-handed alpha
Helix 3	3	A	126	144	Right-handed alpha
Helix 4	4	A	168	175	Right-handed alpha
Helix 5	5	A	179	185	Right-handed alpha
Helix 6	6	A	196	205	Right-handed alpha
Helix 7	7	A	231	236	Right-handed alpha
Helix 8	8	A	267	271	Right-handed 310
Helix 9	9	A	273	292	Right-handed alpha
Helix 10	10	A	325	344	Right-handed alpha
Helix 11	11	A	368	383	Right-handed alpha
Helix 12	12	A	384	386	Right-handed 310
Helix 13	13	A	398	403	Right-handed alpha
Helix 14	14	A	415	419	Right-handed 310
Helix 15	15	A	428	457	Right-handed alpha
Helix 16	16	B	33	46	Right-handed alpha
Helix 17	17	B	67	84	Right-handed alpha
Helix 18	18	B	126	144	Right-handed alpha
Helix 19	19	B	168	175	Right-handed alpha
Helix 20	20	B	179	185	Right-handed alpha
Helix 21	21	B	196	205	Right-handed alpha
Helix 22	22	B	231	236	Right-handed alpha
Helix 23	23	B	267	271	Right-handed 310
Helix 24	24	B	273	292	Right-handed alpha
Helix 25	25	B	325	344	Right-handed alpha
Helix 26	26	B	368	383	Right-handed alpha
Helix 27	27	B	384	386	Right-handed 310
Helix 28	28	B	398	403	Right-handed alpha
Helix 29	29	B	415	419	Right-handed 310
Helix 30	30	B	428	457	Right-handed alpha
Helix 31	31	C	33	46	Right-handed alpha
Helix 32	32	C	67	84	Right-handed alpha
Helix 33	33	C	126	143	Right-handed alpha
Helix 34	34	C	168	175	Right-handed alpha
Helix 35	35	C	179	185	Right-handed alpha
Helix 36	36	C	196	205	Right-handed alpha
Helix 37	37	C	231	236	Right-handed alpha
Helix 38	38	C	267	271	Right-handed 310
Helix 39	39	C	273	292	Right-handed alpha
Helix 40	40	C	325	344	Right-handed alpha
Helix 41	41	C	368	383	Right-handed alpha
Helix 42	42	C	384	386	Right-handed 310
Helix 43	43	C	397	403	Right-handed alpha
Helix 44	44	C	415	419	Right-handed 310
Helix 45	45	C	428	457	Right-handed alpha
Helix 46	46	D	33	46	Right-handed alpha
Helix 47	47	D	67	84	Right-handed alpha
Helix 48	48	D	126	143	Right-handed alpha
Helix 49	49	D	168	175	Right-handed alpha
Helix 50	50	D	179	185	Right-handed alpha
Helix 51	51	D	196	205	Right-handed alpha
Helix 52	52	D	231	236	Right-handed alpha
Helix 53	53	D	267	271	Right-handed 310
Helix 54	54	D	273	292	Right-handed alpha
Helix 55	55	D	325	344	Right-handed alpha
Helix 56	56	D	368	383	Right-handed alpha
Helix 57	57	D	384	386	Right-handed 310
Helix 58	58	D	398	403	Right-handed alpha
Helix 59	59	D	415	419	Right-handed 310
Helix 60	60	D	428	457	Right-handed alpha

There are 19 sheets in PDB entry 2V8H. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	60	61	anti-parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	151	155	anti-parallel
Strand 4	A	109	113	parallel
Strand 5	A	221	227	parallel
Strand 6	A	408	413	parallel
Strand 7	A	240	246	anti-parallel
Strand 8	A	388	393	parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	151	155	anti-parallel
Strand 4	A	109	113	parallel
Strand 5	A	221	227	parallel
Strand 6	A	408	413	parallel
Strand 7	A	240	246	anti-parallel
Strand 8	A	365	366	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	314	323	anti-parallel
Strand 3	A	248	257	anti-parallel
Strand 4	A	353	362	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	314	323	anti-parallel
Strand 3	A	301	304	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	310	311	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	60	61	anti-parallel

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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	151	155	anti-parallel
Strand 4	B	109	113	parallel
Strand 5	B	221	227	parallel
Strand 6	B	408	413	parallel
Strand 7	B	240	246	anti-parallel
Strand 8	B	388	393	parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	151	155	anti-parallel
Strand 4	B	109	113	parallel
Strand 5	B	221	227	parallel
Strand 6	B	408	413	parallel
Strand 7	B	240	246	anti-parallel
Strand 8	B	365	366	anti-parallel

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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	314	323	anti-parallel
Strand 3	B	301	304	anti-parallel
Strand 4	B	314	323	anti-parallel
Strand 5	B	353	362	first strand
Strand 6	B	248	257	anti-parallel
Strand 7	B	314	323	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	310	311	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	60	61	anti-parallel

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There are 11 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	151	155	anti-parallel
Strand 4	C	109	113	parallel
Strand 5	C	221	227	parallel
Strand 6	C	408	413	parallel
Strand 7	C	240	246	anti-parallel
Strand 8	C	365	366	anti-parallel
Strand 9	C	240	246	anti-parallel
Strand 10	C	388	393	parallel
Strand 11	C	240	246	parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	314	323	anti-parallel
Strand 3	C	301	304	anti-parallel
Strand 4	C	314	323	anti-parallel
Strand 5	C	353	362	first strand
Strand 6	C	248	257	anti-parallel
Strand 7	C	314	323	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	310	311	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	60	61	anti-parallel

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There are 11 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	151	155	anti-parallel
Strand 4	D	109	113	parallel
Strand 5	D	221	227	parallel
Strand 6	D	408	413	parallel
Strand 7	D	240	246	anti-parallel
Strand 8	D	365	366	anti-parallel
Strand 9	D	240	246	anti-parallel
Strand 10	D	388	393	parallel
Strand 11	D	240	246	parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	297	first strand
Strand 2	D	314	323	anti-parallel
Strand 3	D	301	304	anti-parallel
Strand 4	D	314	323	anti-parallel
Strand 5	D	353	362	first strand
Strand 6	D	248	257	anti-parallel
Strand 7	D	314	323	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	D	310	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2V8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8H