Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V8J entry

There is 1 chain in PDB entry 2V8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5VAL 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2V8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 20Right-handed alpha
Helix 2
2
A
59 62Right-handed 310
Helix 3
3
A
63 78Right-handed alpha
Helix 4
4
A
80 97Right-handed alpha
Helix 5
5
A
137 145Right-handed alpha
Helix 6
6
A
145 160Right-handed alpha
Helix 7
7
A
181 185Right-handed 310
Helix 8
8
A
201 220Right-handed alpha
Helix 9
9
A
221 234Right-handed alpha
Helix 10
10
A
266 270Right-handed 310
Helix 11
11
A
271 282Right-handed alpha
Helix 12
12
A
286 288Right-handed 310
Helix 13
13
A
294 301Right-handed alpha
Helix 14
14
A
301 314Right-handed alpha
Helix 15
15
A
315 317Right-handed 310
Helix 16
16
A
318 336Right-handed alpha
Helix 17
17
A
378 392Right-handed alpha
Helix 18
18
A
394 408Right-handed alpha
Helix 19
19
A
431 446Right-handed alpha
Helix 20
20
A
447 465Right-handed alpha
Helix 21
21
A
485 498Right-handed alpha
Helix 22
22
A
531 535Right-handed alpha
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There are 10 sheets in PDB entry 2V8J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
480 481anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
111 113anti-parallel
Strand 4
A
119 120anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
251 253parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
347 348anti-parallel
Strand 3
A
352 353anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
343 344anti-parallel
Strand 3
A
375 376anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
371 372anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
422 423anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
470 471anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 519first strand
Strand 2
A
525 530anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il