Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V8M entry

There are 4 chains in PDB entry 2V8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 106
B
 ALA 1THR 106
C
 ALA 1THR 106
D
 ALA 1THR 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2V8M

There are 11 sheets in PDB entry 2V8M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
57 61anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
81 88anti-parallel
Strand 4
A
102 103anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
81 88anti-parallel
Strand 4
A
91 95anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 16first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
57 61anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
34 42anti-parallel
Strand 3
B
79 88anti-parallel
Strand 4
B
102 103anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
34 42anti-parallel
Strand 3
B
79 88anti-parallel
Strand 4
B
91 95anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 16first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
67 74anti-parallel
Strand 4
C
57 60anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
34 41anti-parallel
Strand 3
C
81 88anti-parallel
Strand 4
C
102 103anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
34 41anti-parallel
Strand 3
C
81 88anti-parallel
Strand 4
C
91 95anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 16first strand
Strand 2
D
20 28anti-parallel
Strand 3
D
67 75anti-parallel
Strand 4
D
57 61anti-parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
34 40anti-parallel
Strand 3
D
81 88anti-parallel
Strand 4
D
91 95anti-parallel
Strand 5
D
81 88anti-parallel
Strand 6
D
102 103anti-parallel
Strand 7
D
81 88anti-parallel
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