Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V8O entry

There is 1 chain in PDB entry 2V8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 176LYS 618
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2V8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
180 185Right-handed 310
Helix 2
2
A
203 215Right-handed alpha
Helix 3
3
A
225 236Right-handed alpha
Helix 4
4
A
263 271Right-handed alpha
Helix 5
5
A
291 307Right-handed alpha
Helix 6
6
A
349 355Right-handed alpha
Helix 7
7
A
365 379Right-handed alpha
Helix 8
8
A
390 399Right-handed alpha
Helix 9
9
A
410 414Right-handed 310
Helix 10
10
A
451 460Right-handed alpha
Helix 11
11
A
486 497Right-handed alpha
Helix 12
12
A
510 514Right-handed 310
Helix 13
13
A
527 540Right-handed alpha
Helix 14
14
A
544 553Right-handed alpha
Helix 15
15
A
560 565Right-handed 310
Helix 16
16
A
568 572Right-handed 310
Helix 17
17
A
600 602Right-handed 310
Helix 18
18
A
604 616Right-handed alpha
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There are 4 sheets in PDB entry 2V8O. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
311 315parallel
Strand 3
A
281 285parallel
Strand 4
A
219 223parallel
Strand 5
A
258 262parallel
Strand 6
A
241 243parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
471 475parallel
Strand 3
A
422 425parallel
Strand 4
A
359 362parallel
Strand 5
A
405 408parallel
Strand 6
A
383 386parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
448 449anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 435first strand
Strand 2
A
441 444anti-parallel
Strand 3
A
597 598parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il