Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9D entry

There are 4 chains in PDB entry 2V9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12CYS 309
B
 ALA 12CYS 309
C
 ALA 12CYS 309
D
 ALA 12CYS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 2V9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 46Right-handed alpha
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
64 80Right-handed alpha
Helix 4
4
A
93 108Right-handed alpha
Helix 5
5
A
123 137Right-handed alpha
Helix 6
6
A
147 152Right-handed alpha
Helix 7
7
A
156 167Right-handed alpha
Helix 8
8
A
179 194Right-handed alpha
Helix 9
9
A
203 205Right-handed 310
Helix 10
10
A
206 213Right-handed alpha
Helix 11
11
A
220 224Right-handed 310
Helix 12
12
A
226 239Right-handed alpha
Helix 13
13
A
241 255Right-handed alpha
Helix 14
14
A
256 262Right-handed 310
Helix 15
15
A
265 276Right-handed alpha
Helix 16
16
A
292 306Right-handed alpha
Helix 17
17
B
32 46Right-handed alpha
Helix 18
18
B
59 63Right-handed 310
Helix 19
19
B
64 80Right-handed alpha
Helix 20
20
B
93 108Right-handed alpha
Helix 21
21
B
123 138Right-handed alpha
Helix 22
22
B
147 152Right-handed alpha
Helix 23
23
B
156 167Right-handed alpha
Helix 24
24
B
179 194Right-handed alpha
Helix 25
25
B
203 205Right-handed 310
Helix 26
26
B
206 213Right-handed alpha
Helix 27
27
B
220 224Right-handed 310
Helix 28
28
B
226 239Right-handed alpha
Helix 29
29
B
241 255Right-handed alpha
Helix 30
30
B
256 262Right-handed 310
Helix 31
31
B
265 276Right-handed alpha
Helix 32
32
B
292 306Right-handed alpha
Helix 33
33
C
32 46Right-handed alpha
Helix 34
34
C
59 63Right-handed 310
Helix 35
35
C
64 80Right-handed alpha
Helix 36
36
C
93 107Right-handed alpha
Helix 37
37
C
123 137Right-handed alpha
Helix 38
38
C
147 152Right-handed alpha
Helix 39
39
C
156 167Right-handed alpha
Helix 40
40
C
179 194Right-handed alpha
Helix 41
41
C
203 205Right-handed 310
Helix 42
42
C
206 213Right-handed alpha
Helix 43
43
C
220 224Right-handed 310
Helix 44
44
C
226 239Right-handed alpha
Helix 45
45
C
241 255Right-handed alpha
Helix 46
46
C
256 262Right-handed 310
Helix 47
47
C
265 276Right-handed alpha
Helix 48
48
C
292 306Right-handed alpha
Helix 49
49
D
32 46Right-handed alpha
Helix 50
50
D
55 59Right-handed 310
Helix 51
51
D
59 63Right-handed 310
Helix 52
52
D
64 80Right-handed alpha
Helix 53
53
D
93 107Right-handed alpha
Helix 54
54
D
123 137Right-handed alpha
Helix 55
55
D
147 152Right-handed alpha
Helix 56
56
D
156 167Right-handed alpha
Helix 57
57
D
179 194Right-handed alpha
Helix 58
58
D
203 205Right-handed 310
Helix 59
59
D
206 213Right-handed alpha
Helix 60
60
D
220 224Right-handed 310
Helix 61
61
D
226 239Right-handed alpha
Helix 62
62
D
241 255Right-handed alpha
Helix 63
63
D
256 262Right-handed 310
Helix 64
64
D
265 276Right-handed alpha
Helix 65
65
D
292 306Right-handed alpha
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There are 4 sheets in PDB entry 2V9D. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
217 218parallel
Strand 3
A
198 201parallel
Strand 4
A
170 175parallel
Strand 5
A
142 146parallel
Strand 6
A
111 115parallel
Strand 7
A
85 88parallel
Strand 8
A
51 53parallel
Strand 9
A
20 21parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
217 218parallel
Strand 3
B
198 201parallel
Strand 4
B
170 175parallel
Strand 5
B
142 146parallel
Strand 6
B
111 115parallel
Strand 7
B
85 88parallel
Strand 8
B
51 53parallel
Strand 9
B
20 21parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
217 218parallel
Strand 3
C
198 201parallel
Strand 4
C
170 175parallel
Strand 5
C
142 146parallel
Strand 6
C
111 115parallel
Strand 7
C
85 88parallel
Strand 8
C
51 53parallel
Strand 9
C
20 21parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 17first strand
Strand 2
D
217 218parallel
Strand 3
D
198 201parallel
Strand 4
D
170 175parallel
Strand 5
D
142 146parallel
Strand 6
D
111 115parallel
Strand 7
D
85 88parallel
Strand 8
D
51 53parallel
Strand 9
D
20 21parallel
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