Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9K entry

There is 1 chain in PDB entry 2V9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ASP 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2V9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 7Right-handed 310
Helix 2
2
A
8 19Right-handed alpha
Helix 3
3
A
21 29Right-handed alpha
Helix 4
4
A
34 39Right-handed 310
Helix 5
5
A
40 53Right-handed alpha
Helix 6
6
A
117 120Right-handed 310
Helix 7
7
A
121 135Right-handed alpha
Helix 8
8
A
151 170Right-handed alpha
Helix 9
9
A
175 179Right-handed 310
Helix 10
10
A
181 199Right-handed alpha
Helix 11
11
A
216 219Right-handed 310
Helix 12
12
A
220 228Right-handed alpha
Helix 13
13
A
245 256Right-handed alpha
Helix 14
14
A
257 265Right-handed alpha
Helix 15
15
A
317 324Right-handed alpha
Helix 16
16
A
325 331Right-handed alpha
Helix 17
17
A
369 382Right-handed alpha
Helix 18
18
A
397 410Right-handed alpha
Helix 19
19
A
425 430Right-handed alpha
Helix 20
20
A
431 435Right-handed 310
Helix 21
21
A
445 449Right-handed 310
Helix 22
22
A
485 492Right-handed alpha
Helix 23
23
A
500 506Right-handed alpha
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There are 3 sheets in PDB entry 2V9K. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
208 215parallel
Strand 3
A
277 285anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
348 361anti-parallel
Strand 3
A
288 296anti-parallel
Strand 4
A
387 395anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
348 361anti-parallel
Strand 3
A
509 519parallel
Strand 4
A
412 420anti-parallel
Strand 5
A
473 480anti-parallel
Strand 6
A
456 470anti-parallel
Strand 7
A
438 443anti-parallel
Strand 8
A
497 498anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il